Non-Coding RNA Search

Ss1.1-rjej31b_d18.5

Sequence:


               
               AGAACAGGAGCCTCCCTCCAGGAGAGAGGACCCTGTGCCCACAGCAGCTGCTGCTTTTCT
CCAGAATTTCGGCACGCCAGGCTGGCACGATGCGTGTGGTGGTGATTGGAGCAGGCGTCA
TTGGGCTGTCCACTGCCCTCTGCATCCACGAGCGCTACCACTCTGTCCTGCAGCCCCTCG
ATGTGAAGGTCTACGCAGACCGCTTCACCCCGTTCACCACCACTGATGTAGCTGCTGGCC
TCTGGCAGCCCTACACCTCTGAGCCCAGCAACCCACAGGAGGCGAACTGGAACCAACAGA
CCTTCAACTATCTCCTGAGTCACATCGGTTCTCCCAATGCTGCAAACATGGGTCTGACCC
CAGTCTCAGGCTACAACCTCTTCCGTGAAGCTGTTCCGGACCCTTACTGGAAAGACATGG
TCCTGGGATTCCGAAAGCTGACTCCCAGAGAACTGGACATGTTTCCTGATTATAGATATG
GCTGGTTCAACACATCCCTGATTCTGGAGGGAAGGAAGTACCTACAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACAGGAGCCTCCCTCCAGGAGAGAGGACCCTGTGCCCACAGCAGCTGCTGCTTTTCT
CCAGAATTTCGGCACGCCAGGCTGGCACGATGCGTGTGGTGGTGATTGGAGCAGGCGTCA
TTGGGCTGTCCACTGCCCTCTGCATCCACGAGCGCTACCACTCTGTCCTGCAGCCCCTCG
ATGTGAAGGTCTACGCAGACCGCTTCACCCCGTTCACCACCACTGATGTAGCTGCTGGCC
TCTGGCAGCCCTACACCTCTGAGCCCAGCAACCCACAGGAGGCGAACTGGAACCAACAGA
CCTTCAACTATCTCCTGAGTCACATCGGTTCTCCCAATGCTGCAAACATGGGTCTGACCC
CAGTCTCAGGCTACAACCTCTTCCGTGAAGCTGTTCCGGACCCTTACTGGAAAGACATGG
TCCTGGGATTCCGAAAGCTGACTCCCAGAGAACTGGACATGTTTCCTGATTATAGATATG
GCTGGTTCAACACATCCCTGATTCTGGAGGGAAGGAAGTACCTACAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|552363|gb|AAA31025.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|552363|gb|AAA31025.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               78-284, gnl|bosTau2|chr17 (35139153-35139359)
               

               
               78-284, gnl|Hg17|chr12 (107781237-107781443)
               

               
               78-284, gnl|Mm7|chr5 (113231678-113231881)
               


               
               286-399, gnl|bosTau2|chr17 (35141351-35141464)
               

               
               286-399, gnl|Hg17|chr12 (107783694-107783807)
               

               
               286-399, gnl|Mm7|chr5 (113234381-113234494)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-284, gnl|bosTau2|chr17 (35139153-35139359)
               

               
               78-284, gnl|Hg17|chr12 (107781237-107781443)
               

               
               78-284, gnl|Mm7|chr5 (113231678-113231881)
               


               
               286-399, gnl|bosTau2|chr17 (35141351-35141464)
               

               
               286-399, gnl|Hg17|chr12 (107783694-107783807)
               

               
               286-399, gnl|Mm7|chr5 (113234381-113234494)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               jej (0.0989218)

	78-284, gnl\|bosTau2\|chr17 (35139153-35139359)
	78-284, gnl\|Hg17\|chr12 (107781237-107781443)
	78-284, gnl\|Mm7\|chr5 (113231678-113231881)

	286-399, gnl\|bosTau2\|chr17 (35141351-35141464)
	286-399, gnl\|Hg17\|chr12 (107783694-107783807)
	286-399, gnl\|Mm7\|chr5 (113234381-113234494)