Non-Coding RNA Search

Ss1.1-rjej31b_e2.5

Sequence:


               
               TAGTTCTTGACTTCGTCTGCACCGTCATCTAGATTGTACTGTACATCTCGATCTGAACTT
CATCCTGGCAAAAAAACAAAGTTGCGGGCACAACAGTTTAAGAATGCATTCCTCCAGAAA
AGCGTTTGATGAGGTTGACCCTGAGCCGCCTTTGGACTTTCTTTGGAGCTAGGCATGGAA
AGCAAAAGTGGACTGTCCCATGGAAAGACATCGACAAGGAAGAGAGGAGAGCCGAGTGCT
AGCGTGTCTTTTGCCTCTGCCTATCTGTACACACTGTATGTCGTTCATGATATAGCTTGT
CTACAACTTGACTAGGTCGGAGTTCTGGTAATAGTGGCAATCTTGACATTTCTTGGTCAG
AGTTTAGAGAGATGTAAGACTTCCAATTAATGTCTTATTTACTTCTTTATGTTGATTAGT
CTTTGATACATGTGCTGAATCAGAAACCTAAATAAAGATAATTTTTTAAAATGAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGTTCTTGACTTCGTCTGCACCGTCATCTAGATTGTACTGTACATCTCGATCTGAACTT
CATCCTGGCAAAAAAACAAAGTTGCGGGCACAACAGTTTAAGAATGCATTCCTCCAGAAA
AGCGTTTGATGAGGTTGACCCTGAGCCGCCTTTGGACTTTCTTTGGAGCTAGGCATGGAA
AGCAAAAGTGGACTGTCCCATGGAAAGACATCGACAAGGAAGAGAGGAGAGCCGAGTGCT
AGCGTGTCTTTTGCCTCTGCCTATCTGTACACACTGTATGTCGTTCATGATATAGCTTGT
CTACAACTTGACTAGGTCGGAGTTCTGGTAATAGTGGCAATCTTGACATTTCTTGGTCAG
AGTTTAGAGAGATGTAAGACTTCCAATTAATGTCTTATTTACTTCTTTATGTTGATTAGT
CTTTGATACATGTGCTGAATCAGAAACCTAAATAAAGATAATTTTTTAAAATGAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-475, gnl|bosTau2|chr28 (11262250-11262719)
               

               
               1-475, gnl|Hg17|chr10 (61218997-61218527)
               

               
               1-475, gnl|Mm7|chr10 (69794925-69795411)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-475, gnl|bosTau2|chr28 (11262250-11262719)
               

               
               1-475, gnl|Hg17|chr10 (61218997-61218527)
               

               
               1-475, gnl|Mm7|chr10 (69794925-69795411)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               eye (0.170503)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	1-475, gnl\|bosTau2\|chr28 (11262250-11262719)
	1-475, gnl\|Hg17\|chr10 (61218997-61218527)
	1-475, gnl\|Mm7\|chr10 (69794925-69795411)

	eye (0.170503)
	nje (0.16592)
	tbr (0.154178)
	lin (0.145603)
	lnt (0.142308)
	csk (0.140746)
	ssp (0.13552)
	lyg (0.133103)
	ova (0.129132)
	eru (0.120048)
	spc (0.113366)
	jej (0.0989218)