Ss1.1-rjej31b_o1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGTTTCTCTCTCACCTTGTTGATGGTGTTAAACGAATACTGGAAAATCCACAGAGTTT ATTAGACCCAAACAATTACCATGAGTTTTGCAGACTACTGGCCCGATTGAAGAGTAACTA TCAACTGGGAGAATTAGTAAAGGTGGAAAACTACCCTGAGGTCATCCGATTGATAGCTAA CTTCACAGTGACCAGCCTACAGCACTGGGAATTTGCCCCAGACAGTGTGCACTATCTCCT GAGCTTGTGGCAGCGGCTGGCAGCCTCTGTGCCATACGTGAAAGCCACAGAGCCCCACAT GCTGGAAACTTATACTCCTGAGGTCACCAAAGCCTACATCACATCCCGTTTGGAATCTGT GCACATCATACTGAGAGATGGACTGGAAGACCCCCTGGAGGATACAGGGCTGGTCCAGCA GCAGTTGGACCAGCTGTCCACAATCGGGCGCTGTGAGTACGAGAAGACGTGTGCGCTGCT TGTGCAGCTGTTTGACCAGTCTGCCCAGTCCTATCAGGAGCTGCTCCAGAGCGCCAGCGC GAGCCCCATGGACATCGCGGTGCAGGAGGGAAGGCTGACGTGGCTGGTGTACATCATCGG GGCAGTAATCGGGGGCCGGGTCTCTTTTGCCAGCACTGATGAGCAAGATGCCATGGATGG CGAGCTTGTCTGTCGGGTGCTCCAGCTGATGAACCTAACAGACTCGCGCTTGGCTCAGGC GGGTAATGAGAAACTAGAACTGGCTATGCTGAGCTTCTTTGAACAGTTTCGTAAGATCTA CATTGGGGACCAGGTGCAGAAATCCTCTAAGCTGTACCGGCGCCTCTCAGAAGTTCTTGG CCTGAATGACGAGACCATGGTCCTCAGCGTCTTCATCGGAAAAATCATCACCAACCTGAA GTACTGGGGCCGCTGTGAACCAATCACCTCCAAGACACTACAGCTTCTTAATGACCTCTC CATTGGATACAGTAGTGTAAGGAAACTAGTGAAGCTGAGTGCAGTGCAGTTCATGCTGAA CAATCACACGAGCGAGCACTTTTCATTTTTGGGTATTAACAATCAGTCCAACCTGACAGA CATGCGTTGTCGAACTACCTTCTACACAGCACTTGGGCGTCTCCTCATGGTGGATTTAGG AGAGGATGAAGACCAGTATGAGCAGTTCATGCTGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGTTTCTCTCTCACCTTGTTGATGGTGTTAAACGAATACTGGAAAATCCACAGAGTTT ATTAGACCCAAACAATTACCATGAGTTTTGCAGACTACTGGCCCGATTGAAGAGTAACTA TCAACTGGGAGAATTAGTAAAGGTGGAAAACTACCCTGAGGTCATCCGATTGATAGCTAA CTTCACAGTGACCAGCCTACAGCACTGGGAATTTGCCCCAGACAGTGTGCACTATCTCCT GAGCTTGTGGCAGCGGCTGGCAGCCTCTGTGCCATACGTGAAAGCCACAGAGCCCCACAT GCTGGAAACTTATACTCCTGAGGTCACCAAAGCCTACATCACATCCCGTTTGGAATCTGT GCACATCATACTGAGAGATGGACTGGAAGACCCCCTGGAGGATACAGGGCTGGTCCAGCA GCAGTTGGACCAGCTGTCCACAATCGGGCGCTGTGAGTACGAGAAGACGTGTGCGCTGCT TGTGCAGCTGTTTGACCAGTCTGCCCAGTCCTATCAGGAGCTGCTCCAGAGCGCCAGCGC GAGCCCCATGGACATCGCGGTGCAGGAGGGAAGGCTGACGTGGCTGGTGTACATCATCGG GGCAGTAATCGGGGGCCGGGTCTCTTTTGCCAGCACTGATGAGCAAGATGCCATGGATGG CGAGCTTGTCTGTCGGGTGCTCCAGCTGATGAACCTAACAGACTCGCGCTTGGCTCAGGC GGGTAATGAGAAACTAGAACTGGCTATGCTGAGCTTCTTTGAACAGTTTCGTAAGATCTA CATTGGGGACCAGGTGCAGAAATCCTCTAAGCTGTACCGGCGCCTCTCAGAAGTTCTTGG CCTGAATGACGAGACCATGGTCCTCAGCGTCTTCATCGGAAAAATCATCACCAACCTGAA GTACTGGGGCCGCTGTGAACCAATCACCTCCAAGACACTACAGCTTCTTAATGACCTCTC CATTGGATACAGTAGTGTAAGGAAACTAGTGAAGCTGAGTGCAGTGCAGTTCATGCTGAA CAATCACACGAGCGAGCACTTTTCATTTTTGGGTATTAACAATCAGTCCAACCTGACAGA CATGCGTTGTCGAACTACCTTCTACACAGCACTTGGGCGTCTCCTCATGGTGGATTTAGG AGAGGATGAAGACCAGTATGAGCAGTTCATGCTGCC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 84-202, - strand, RNAz p=0.996839 | |
| 374-492, + strand, RNAz p=0.90522 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 84-202, - strand, RNAz p=0.996839 | |
| 374-492, + strand, RNAz p=0.90522 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 98-195, - strand, RNAmicro p=0.993932 |
| Similar Transcript(s): 6 entry(ies) | More info |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
| 84-202, BP158149 full-length enriched swine cDNA library, adult spleen Sus (dbj|BP158149.1|), blast E-value=0, identity=100% | |
| 84-202, BW972306 full-length enriched swine cDNA library, adult periphral (dbj|BW972306.1|), blast E-value=0, identity=100% | |
| 84-202, DA412023 BRTHA3 Homo sapiens cDNA clone BRTHA3019428 5', mRNA (dbj|DA412023.1|), blast E-value=0, identity=98.32% | |
| 84-202, DA755022 NT2RP8 Homo sapiens cDNA clone NT2RP8001214 5', mRNA (dbj|DA755022.1|), blast E-value=0, identity=98.32% | |
| 84-202, DB154086 THYMU3 Homo sapiens cDNA clone THYMU3031929 5', mRNA (dbj|DB154086.1|), blast E-value=0, identity=98.32% | |
| 84-202, DB165475 THYMU3 Homo sapiens cDNA clone THYMU3047534 5', mRNA (dbj|DB165475.1|), blast E-value=0, identity=98.32% |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 84-202, BP158149 full-length enriched swine cDNA library, adult spleen Sus (dbj|BP158149.1|), blast E-value=0, identity=100% | |
| 84-202, BW972306 full-length enriched swine cDNA library, adult periphral (dbj|BW972306.1|), blast E-value=0, identity=100% | |
| 84-202, DA412023 BRTHA3 Homo sapiens cDNA clone BRTHA3019428 5', mRNA (dbj|DA412023.1|), blast E-value=0, identity=98.32% | |
| 84-202, DA755022 NT2RP8 Homo sapiens cDNA clone NT2RP8001214 5', mRNA (dbj|DA755022.1|), blast E-value=0, identity=98.32% | |
| 84-202, DB154086 THYMU3 Homo sapiens cDNA clone THYMU3031929 5', mRNA (dbj|DB154086.1|), blast E-value=0, identity=98.32% | |
| 84-202, DB165475 THYMU3 Homo sapiens cDNA clone THYMU3047534 5', mRNA (dbj|DB165475.1|), blast E-value=0, identity=98.32% |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 53-202, gnl|bosTau2|chr8 (31598819-31598670) | |
| 53-202, gnl|Hg17|chr8 (21895185-21895334) | |
| 53-202, gnl|Mm7|chr14 (65337284-65337135) | |
| 374-579, gnl|bosTau2|chr8 (31595739-31595534) | |
| 374-579, gnl|Hg17|chr8 (21898101-21898306) | |
| 374-579, gnl|Mm7|chr14 (65332806-65332591) | |
| 675-811, gnl|bosTau2|chr8 (31593310-31593174) | |
| 675-811, gnl|canFam2|chr25 (38244566-38244381) | |
| 675-811, gnl|danRer3|chr10 (13642983-13643146) | |
| 675-811, gnl|dasNov1|scaffold_3688 (61597-61783) | |
| 675-811, gnl|echTel1|scaffold_276383 (32127-31942) | |
| 675-811, gnl|fr1|chrUn (215465315-215465127) | |
| 675-811, gnl|galGal2|chrUn (9330548-9330733) | |
| 675-811, gnl|hg17|chr8 (21900561-21900746) | |
| 675-811, gnl|Hg17|chr8 (21900597-21900733) | |
| 675-811, gnl|loxAfr1|scaffold_37779 (15843-15656) | |
| 675-811, gnl|mm7|chr14 (65330077-65329895) | |
| 675-811, gnl|Mm7|chr14 (65330042-65329906) | |
| 675-811, gnl|monDom2|scaffold_1 (73670861-73670676) | |
| 675-811, gnl|oryCun1|scaffold_81070 (5185-5000) | |
| 675-811, gnl|panTro1|chr7 (22831650-22831835) | |
| 675-811, gnl|rheMac2|chr8 (21910543-21910728) | |
| 675-811, gnl|rn3|chr15 (51105646-51105461) | |
| 675-811, gnl|tetNig1|chrUn_random (48339-48184) | |
| 675-811, gnl|xenTro1|scaffold_106 (1439015-1438813) | |
| 1030-1140, gnl|bosTau2|chr8 (31589363-31589253) | |
| 1030-1140, gnl|canFam2|chr25 (38241139-38241014) | |
| 1030-1140, gnl|danRer3|chr10 (13646158-13646277) | |
| 1030-1140, gnl|dasNov1|scaffold_3688 (65099-65224) | |
| 1030-1140, gnl|echTel1|scaffold_276383 (28806-28681) | |
| 1030-1140, gnl|fr1|chrUn (215464314-215464195) | |
| 1030-1140, gnl|galGal2|chrUn (9334100-9334221) | |
| 1030-1140, gnl|hg17|chr8 (21904258-21904383) | |
| 1030-1140, gnl|Hg17|chr8 (21904267-21904377) | |
| 1030-1140, gnl|loxAfr1|scaffold_37779 (12324-12199) | |
| 1030-1140, gnl|mm7|chr14 (65326937-65326812) | |
| 1030-1140, gnl|Mm7|chr14 (65326926-65326816) | |
| 1030-1140, gnl|monDom2|scaffold_1 (73667854-73667729) | |
| 1030-1140, gnl|oryCun1|scaffold_81070 (1887-1762) | |
| 1030-1140, gnl|panTro1|chr7 (22835229-22835354) | |
| 1030-1140, gnl|rheMac2|chr8 (21913883-21914008) | |
| 1030-1140, gnl|rn3|chr15 (51102327-51102202) | |
| 1030-1140, gnl|tetNig1|chrUn_random (47289-47170) | |
| 1030-1140, gnl|xenTro1|scaffold_106 (1435773-1435653) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 53-202, gnl|bosTau2|chr8 (31598819-31598670) | |
| 53-202, gnl|Hg17|chr8 (21895185-21895334) | |
| 53-202, gnl|Mm7|chr14 (65337284-65337135) | |
| 374-579, gnl|bosTau2|chr8 (31595739-31595534) | |
| 374-579, gnl|Hg17|chr8 (21898101-21898306) | |
| 374-579, gnl|Mm7|chr14 (65332806-65332591) | |
| 675-811, gnl|bosTau2|chr8 (31593310-31593174) | |
| 675-811, gnl|canFam2|chr25 (38244566-38244381) | |
| 675-811, gnl|danRer3|chr10 (13642983-13643146) | |
| 675-811, gnl|dasNov1|scaffold_3688 (61597-61783) | |
| 675-811, gnl|echTel1|scaffold_276383 (32127-31942) | |
| 675-811, gnl|fr1|chrUn (215465315-215465127) | |
| 675-811, gnl|galGal2|chrUn (9330548-9330733) | |
| 675-811, gnl|hg17|chr8 (21900561-21900746) | |
| 675-811, gnl|Hg17|chr8 (21900597-21900733) | |
| 675-811, gnl|loxAfr1|scaffold_37779 (15843-15656) | |
| 675-811, gnl|mm7|chr14 (65330077-65329895) | |
| 675-811, gnl|Mm7|chr14 (65330042-65329906) | |
| 675-811, gnl|monDom2|scaffold_1 (73670861-73670676) | |
| 675-811, gnl|oryCun1|scaffold_81070 (5185-5000) | |
| 675-811, gnl|panTro1|chr7 (22831650-22831835) | |
| 675-811, gnl|rheMac2|chr8 (21910543-21910728) | |
| 675-811, gnl|rn3|chr15 (51105646-51105461) | |
| 675-811, gnl|tetNig1|chrUn_random (48339-48184) | |
| 675-811, gnl|xenTro1|scaffold_106 (1439015-1438813) | |
| 1030-1140, gnl|bosTau2|chr8 (31589363-31589253) | |
| 1030-1140, gnl|canFam2|chr25 (38241139-38241014) | |
| 1030-1140, gnl|danRer3|chr10 (13646158-13646277) | |
| 1030-1140, gnl|dasNov1|scaffold_3688 (65099-65224) | |
| 1030-1140, gnl|echTel1|scaffold_276383 (28806-28681) | |
| 1030-1140, gnl|fr1|chrUn (215464314-215464195) | |
| 1030-1140, gnl|galGal2|chrUn (9334100-9334221) | |
| 1030-1140, gnl|hg17|chr8 (21904258-21904383) | |
| 1030-1140, gnl|Hg17|chr8 (21904267-21904377) | |
| 1030-1140, gnl|loxAfr1|scaffold_37779 (12324-12199) | |
| 1030-1140, gnl|mm7|chr14 (65326937-65326812) | |
| 1030-1140, gnl|Mm7|chr14 (65326926-65326816) | |
| 1030-1140, gnl|monDom2|scaffold_1 (73667854-73667729) | |
| 1030-1140, gnl|oryCun1|scaffold_81070 (1887-1762) | |
| 1030-1140, gnl|panTro1|chr7 (22835229-22835354) | |
| 1030-1140, gnl|rheMac2|chr8 (21913883-21914008) | |
| 1030-1140, gnl|rn3|chr15 (51102327-51102202) | |
| 1030-1140, gnl|tetNig1|chrUn_random (47289-47170) | |
| 1030-1140, gnl|xenTro1|scaffold_106 (1435773-1435653) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| jej (0.0989218) |