Non-Coding RNA Search

Ss1.1-rjej32b_c18.5

Sequence:


               
               CCCACGACACCAAGCGTGCCGGCCACCTCCAAGCCTCTCCCTGCATGCCCAGACTTCGAT
CCTCCCAGACAGGAGAATGAGACCTGGTGGCTGTGTAACTGCACCATGGCCACGTGCAAG
TACAACAACACCGTGGAGCTCGTGGAGGTGAAGTGCGACCCCCCGCCCATGCCCACCTGC
TCCAACGGCCTCGCGCCCGTGCGCGTCATGGACCCCAATGGGTGCTGCTGGCACTGGGAG
TGCGACTGCTACTGCACGGGCTGGGGGGACCCGCACTACGTCACCTTCGATGGGCTGTAC
TACAGCTACCAGGGCAACTGCACCTACGTGCTGGTGGAGGAGGCCACCCCCACCGTGGAC
AACTTCGGGGTGTACATCGACAACTACCACTGCGACGTCAATGACCAGGTGTCCTGCCCC
CGCACGCTCATCGTGCGCCACGAGACCCAGGAGGTGCTGCTCAAGACTGTGCACATGATG
CCCGTGACGGTGCAGGTGCAGGTCAACAGGCAGGTGGTGGCGCTGCCCTACAAGAAGTAC
GGGCTGCAGGTGTACGAGTCCGGCATCAACTACGTGGTGGACATCCCCGACCTGGGTGCC
CTCATCTCCTACAACGGCCTCTCCTTCTCTGTCCGGCTGCCCTACCGCCTCTTTGGCAAC
AACACAAAGGGCCAGTGTGGCACGTGCACCAACACCACCGCGGACGACTGCGTGCTGCCC
AGCGGGGAGGTCACTGACGACTGCGAGGTCGCGGCTGACCAGTGGGTGGTGAATGACCCC
TCCAAGCCTCACTGTCCCCACATCAGCTTCACCACCAGGAGCCCGGCCACCTCGCCGCCT
GTGGGCCGCGGCACCACCGCGAGGAAGGACTGCGCGTCTCCCCTTTGCGAGCTCATCAAG
GACAGCTTGTTCGCCGAGTGCCACGCCCTGGCACCTCCCCAGCACTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACGACACCAAGCGTGCCGGCCACCTCCAAGCCTCTCCCTGCATGCCCAGACTTCGAT
CCTCCCAGACAGGAGAATGAGACCTGGTGGCTGTGTAACTGCACCATGGCCACGTGCAAG
TACAACAACACCGTGGAGCTCGTGGAGGTGAAGTGCGACCCCCCGCCCATGCCCACCTGC
TCCAACGGCCTCGCGCCCGTGCGCGTCATGGACCCCAATGGGTGCTGCTGGCACTGGGAG
TGCGACTGCTACTGCACGGGCTGGGGGGACCCGCACTACGTCACCTTCGATGGGCTGTAC
TACAGCTACCAGGGCAACTGCACCTACGTGCTGGTGGAGGAGGCCACCCCCACCGTGGAC
AACTTCGGGGTGTACATCGACAACTACCACTGCGACGTCAATGACCAGGTGTCCTGCCCC
CGCACGCTCATCGTGCGCCACGAGACCCAGGAGGTGCTGCTCAAGACTGTGCACATGATG
CCCGTGACGGTGCAGGTGCAGGTCAACAGGCAGGTGGTGGCGCTGCCCTACAAGAAGTAC
GGGCTGCAGGTGTACGAGTCCGGCATCAACTACGTGGTGGACATCCCCGACCTGGGTGCC
CTCATCTCCTACAACGGCCTCTCCTTCTCTGTCCGGCTGCCCTACCGCCTCTTTGGCAAC
AACACAAAGGGCCAGTGTGGCACGTGCACCAACACCACCGCGGACGACTGCGTGCTGCCC
AGCGGGGAGGTCACTGACGACTGCGAGGTCGCGGCTGACCAGTGGGTGGTGAATGACCCC
TCCAAGCCTCACTGTCCCCACATCAGCTTCACCACCAGGAGCCCGGCCACCTCGCCGCCT
GTGGGCCGCGGCACCACCGCGAGGAAGGACTGCGCGTCTCCCCTTTGCGAGCTCATCAAG
GACAGCTTGTTCGCCGAGTGCCACGCCCTGGCACCTCCCCAGCACTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10567641|gb|AAG18517.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10567641|gb|AAG18517.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               248-499, gnl|bosTau2|chr26 (5137453-5137202)
               

               
               248-499, gnl|Hg17|chr11 (1086325-1086596)
               

               
               248-499, gnl|Mm7|chr7 (138173636-138173886)
               


               
               679-915, gnl|bosTau2|chr26 (5135694-5135458)
               

               
               679-915, gnl|Hg17|chr11 (1087688-1087928)
               

               
               679-915, gnl|Mm7|chr7 (138175392-138175618)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               248-499, gnl|bosTau2|chr26 (5137453-5137202)
               

               
               248-499, gnl|Hg17|chr11 (1086325-1086596)
               

               
               248-499, gnl|Mm7|chr7 (138173636-138173886)
               


               
               679-915, gnl|bosTau2|chr26 (5135694-5135458)
               

               
               679-915, gnl|Hg17|chr11 (1087688-1087928)
               

               
               679-915, gnl|Mm7|chr7 (138175392-138175618)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	248-499, gnl\|bosTau2\|chr26 (5137453-5137202)
	248-499, gnl\|Hg17\|chr11 (1086325-1086596)
	248-499, gnl\|Mm7\|chr7 (138173636-138173886)

	679-915, gnl\|bosTau2\|chr26 (5135694-5135458)
	679-915, gnl\|Hg17\|chr11 (1087688-1087928)
	679-915, gnl\|Mm7\|chr7 (138175392-138175618)