Ss1.1-rjej32b_f22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTCTAGATTGGAGCAGGGCATCTCAGAGGAGGCAGAGCCTACCCAGAGCTCCACTCAG ACCCACTGTATCTTCCAGTGACCAGCAGAGCTTAATCAGGAAGCTTTGTAAGAGAGAGAG TCCCAGTGAAGAAGTAGCTGCAGTGACACAGCCTTCTAAAGTGAATGCCTCCAAGGAACC AGGTGATCTGAATACCACTGGCTCTGCAGAGGTCCACAAGGCAGTTATAATTTCTAATCC CTTAACCACAGACCAGACTGAGAAGATTGCTGGTTGGTCAAAGAATGTATCAGTTCAACC TGAAACGTCCGAGGACCCTGGTACTACTTCTAGTGTTCAGCAAGTAAAAAGCCCTGGGAA AATGCAGGTTGCTACCCCTCTGCCAGTGGCTCCCTCCTACAGTTATGCTACCTCTACCCC CCAGACCTCATTCCAGAGCACCTCAACACCATACCCAGTTGTAAAGGAACTGGTGGTCTC TGCTGGAAACAGTGTCCAAATTACCCTGCCTAAGAATGAAGTTCAGTTAAATGCATATGT TCTTCCAGAACCACTTGCAGGAGAAACCTACACCTACGACTGGCAGCTGATTACTCATCC TAAAGACTACAGTGGAGAAATGGAAGGGAAACATTCCCAGGTCCTCAAACTATCCAAGCT CACTCCAGGCCTGTATGAATTCAGAGTGATTGTAGATGGTCAAAATGCCCACGGGGAAGG CTATGTGAATGTGACAGTAAAACCAGAGCCTCGTAAGAATCGGCCTCCTGTTGCCATTGT GTCACCACAGTTCCAGGAGATCTCTCTGCCAACTACTTCTACAGTCATTGATGGCAGCCA AAGCACTGATGATGATAAAATCGTCCAGTATCATTGGGAAGAGCTTAAGGGACCTCTGAG AGAAGAGAAGATTTCTGAAGATACGGCCATATTAAAACTAAGTAAGCTCGTCCCTGGGAA CTACACTTTCAGCTTGACTGTAGTAGACTCTGATGGAGCTACCAACTCTACCACTGCAAG CCTGACTGTGAACAAAGCTGTGGATTACCCTCCTGTGGCCAATGCAGGCCCCAACCAAGT GATCACCCTGCCTCAAAACTCCATCACCCTCTTTGGGAATCAGAGCACTGATGATCATGG CATCACCAGCTATGAGTGGTCACTCAGCCCAAGCAGCAAAGGGAAGGTGATGGAGATGCA GGGTGTTAGAACACCAACGCTGCAGCTTTCCGCCATGCAAGAAGGAGACTACACTTACCA ACTCACAGTGACTGACACAATAGGACAGCAGGCCACTGCTCAAGTGACTGTTATTGTGCA GCCTGAAAATAACAAGCCTCCACAGGCAGATGCAGGCCCAGATAAAGAGCTGACTCTTCC TGTAGATAGCACAACACTGGATGGCAGCAAAAGCTCAGATGATCAGAAAATCATCTCATA TCTCTGGGAAAAAACACAGGGACCTGACGGGGTACAGCTCGAGAATGCTAACAGCAGTGT CGCCACTGTGGCTGGGCTGCAGGTGGGAACCTACGTGTTTACCTTGACTGTCAGAGATGA GAGGAACCTGCAAAGCCAGAGCTCTGTGAATGTCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTCTAGATTGGAGCAGGGCATCTCAGAGGAGGCAGAGCCTACCCAGAGCTCCACTCAG ACCCACTGTATCTTCCAGTGACCAGCAGAGCTTAATCAGGAAGCTTTGTAAGAGAGAGAG TCCCAGTGAAGAAGTAGCTGCAGTGACACAGCCTTCTAAAGTGAATGCCTCCAAGGAACC AGGTGATCTGAATACCACTGGCTCTGCAGAGGTCCACAAGGCAGTTATAATTTCTAATCC CTTAACCACAGACCAGACTGAGAAGATTGCTGGTTGGTCAAAGAATGTATCAGTTCAACC TGAAACGTCCGAGGACCCTGGTACTACTTCTAGTGTTCAGCAAGTAAAAAGCCCTGGGAA AATGCAGGTTGCTACCCCTCTGCCAGTGGCTCCCTCCTACAGTTATGCTACCTCTACCCC CCAGACCTCATTCCAGAGCACCTCAACACCATACCCAGTTGTAAAGGAACTGGTGGTCTC TGCTGGAAACAGTGTCCAAATTACCCTGCCTAAGAATGAAGTTCAGTTAAATGCATATGT TCTTCCAGAACCACTTGCAGGAGAAACCTACACCTACGACTGGCAGCTGATTACTCATCC TAAAGACTACAGTGGAGAAATGGAAGGGAAACATTCCCAGGTCCTCAAACTATCCAAGCT CACTCCAGGCCTGTATGAATTCAGAGTGATTGTAGATGGTCAAAATGCCCACGGGGAAGG CTATGTGAATGTGACAGTAAAACCAGAGCCTCGTAAGAATCGGCCTCCTGTTGCCATTGT GTCACCACAGTTCCAGGAGATCTCTCTGCCAACTACTTCTACAGTCATTGATGGCAGCCA AAGCACTGATGATGATAAAATCGTCCAGTATCATTGGGAAGAGCTTAAGGGACCTCTGAG AGAAGAGAAGATTTCTGAAGATACGGCCATATTAAAACTAAGTAAGCTCGTCCCTGGGAA CTACACTTTCAGCTTGACTGTAGTAGACTCTGATGGAGCTACCAACTCTACCACTGCAAG CCTGACTGTGAACAAAGCTGTGGATTACCCTCCTGTGGCCAATGCAGGCCCCAACCAAGT GATCACCCTGCCTCAAAACTCCATCACCCTCTTTGGGAATCAGAGCACTGATGATCATGG CATCACCAGCTATGAGTGGTCACTCAGCCCAAGCAGCAAAGGGAAGGTGATGGAGATGCA GGGTGTTAGAACACCAACGCTGCAGCTTTCCGCCATGCAAGAAGGAGACTACACTTACCA ACTCACAGTGACTGACACAATAGGACAGCAGGCCACTGCTCAAGTGACTGTTATTGTGCA GCCTGAAAATAACAAGCCTCCACAGGCAGATGCAGGCCCAGATAAAGAGCTGACTCTTCC TGTAGATAGCACAACACTGGATGGCAGCAAAAGCTCAGATGATCAGAAAATCATCTCATA TCTCTGGGAAAAAACACAGGGACCTGACGGGGTACAGCTCGAGAATGCTAACAGCAGTGT CGCCACTGTGGCTGGGCTGCAGGTGGGAACCTACGTGTTTACCTTGACTGTCAGAGATGA GAGGAACCTGCAAAGCCAGAGCTCTGTGAATGTCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 235-342, - strand, RNAz p=0.872888 | |
| 1049-1202, - strand, RNAz p=0.999317 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 235-342, - strand, RNAz p=0.872888 | |
| 1049-1202, - strand, RNAz p=0.999317 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 210-461, gnl|bosTau2|chr3 (77375029-77375277) | |
| 210-461, gnl|canFam2|chr15 (9648768-9648379) | |
| 210-461, gnl|dasNov1|scaffold_1267 (142383-141998) | |
| 210-461, gnl|echTel1|scaffold_309481 (132783-133170) | |
| 210-461, gnl|hg17|chr1 (35613567-35613951) | |
| 210-461, gnl|Hg17|chr1 (35613908-35613657) | |
| 210-461, gnl|loxAfr1|scaffold_3396 (2228-2615) | |
| 210-461, gnl|mm7|chr4 (126259208-126258858) | |
| 210-461, gnl|Mm7|chr4 (126258901-126259152) | |
| 210-461, gnl|monDom2|scaffold_43 (14959973-14959515) | |
| 210-461, gnl|oryCun1|scaffold_208997 (18756-19149) | |
| 210-461, gnl|panTro1|chr1 (36386598-36386982) | |
| 210-461, gnl|rheMac2|chr1 (38288058-38288439) | |
| 210-461, gnl|rn3|chr5 (146234040-146233668) | |
| 970-1202, gnl|bosTau2|chr3 (77391588-77391824) | |
| 1459-1596, gnl|bosTau2|chr3 (77396323-77396460) | |
| 1459-1596, gnl|canFam2|chr15 (9669856-9669684) | |
| 1459-1596, gnl|danRer3|chr19 (69317127-69317286) | |
| 1459-1596, gnl|dasNov1|scaffold_3142 (19791-19621) | |
| 1459-1596, gnl|echTel1|scaffold_301595 (1664-1836) | |
| 1459-1596, gnl|fr1|chrUn (86008059-86007907) | |
| 1459-1596, gnl|galGal2|chr23 (3847999-3847842) | |
| 1459-1596, gnl|hg17|chr1 (35586301-35586473) | |
| 1459-1596, gnl|Hg17|chr1 (35586470-35586333) | |
| 1459-1596, gnl|loxAfr1|scaffold_65551 (6368-6196) | |
| 1459-1596, gnl|mm7|chr4 (126284416-126284245) | |
| 1459-1596, gnl|Mm7|chr4 (126284246-126284383) | |
| 1459-1596, gnl|monDom2|scaffold_43 (15000199-15000027) | |
| 1459-1596, gnl|oryCun1|scaffold_174212 (3405-3233) | |
| 1459-1596, gnl|panTro1|chr1 (36359235-36359407) | |
| 1459-1596, gnl|rheMac2|chr1 (38263007-38263179) | |
| 1459-1596, gnl|rn3|chr5 (146256130-146255959) | |
| 1459-1596, gnl|tetNig1|chr21_random (148804-148958) | |
| 1459-1596, gnl|xenTro1|scaffold_977 (276716-276555) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 210-461, gnl|bosTau2|chr3 (77375029-77375277) | |
| 210-461, gnl|canFam2|chr15 (9648768-9648379) | |
| 210-461, gnl|dasNov1|scaffold_1267 (142383-141998) | |
| 210-461, gnl|echTel1|scaffold_309481 (132783-133170) | |
| 210-461, gnl|hg17|chr1 (35613567-35613951) | |
| 210-461, gnl|Hg17|chr1 (35613908-35613657) | |
| 210-461, gnl|loxAfr1|scaffold_3396 (2228-2615) | |
| 210-461, gnl|mm7|chr4 (126259208-126258858) | |
| 210-461, gnl|Mm7|chr4 (126258901-126259152) | |
| 210-461, gnl|monDom2|scaffold_43 (14959973-14959515) | |
| 210-461, gnl|oryCun1|scaffold_208997 (18756-19149) | |
| 210-461, gnl|panTro1|chr1 (36386598-36386982) | |
| 210-461, gnl|rheMac2|chr1 (38288058-38288439) | |
| 210-461, gnl|rn3|chr5 (146234040-146233668) | |
| 970-1202, gnl|bosTau2|chr3 (77391588-77391824) | |
| 1459-1596, gnl|bosTau2|chr3 (77396323-77396460) | |
| 1459-1596, gnl|canFam2|chr15 (9669856-9669684) | |
| 1459-1596, gnl|danRer3|chr19 (69317127-69317286) | |
| 1459-1596, gnl|dasNov1|scaffold_3142 (19791-19621) | |
| 1459-1596, gnl|echTel1|scaffold_301595 (1664-1836) | |
| 1459-1596, gnl|fr1|chrUn (86008059-86007907) | |
| 1459-1596, gnl|galGal2|chr23 (3847999-3847842) | |
| 1459-1596, gnl|hg17|chr1 (35586301-35586473) | |
| 1459-1596, gnl|Hg17|chr1 (35586470-35586333) | |
| 1459-1596, gnl|loxAfr1|scaffold_65551 (6368-6196) | |
| 1459-1596, gnl|mm7|chr4 (126284416-126284245) | |
| 1459-1596, gnl|Mm7|chr4 (126284246-126284383) | |
| 1459-1596, gnl|monDom2|scaffold_43 (15000199-15000027) | |
| 1459-1596, gnl|oryCun1|scaffold_174212 (3405-3233) | |
| 1459-1596, gnl|panTro1|chr1 (36359235-36359407) | |
| 1459-1596, gnl|rheMac2|chr1 (38263007-38263179) | |
| 1459-1596, gnl|rn3|chr5 (146256130-146255959) | |
| 1459-1596, gnl|tetNig1|chr21_random (148804-148958) | |
| 1459-1596, gnl|xenTro1|scaffold_977 (276716-276555) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.0989218) |