Non-Coding RNA Search

Ss1.1-rjej32b_f9.5

Sequence:


               
               AACTTCCCCAAATCCTCCAGTGCTGATTTGGAACCTTCAATACTTCCCAGAGTCATCAAA
CAGCATCAGCTGTTAGTAAAGTTTCAGCGAACAAAGCTGGTCTACAGACTACAGACAAAT
ATGCAGCGCTTGCTAACTTAGATAATATCTTCAGTGCTGGGCAAGGTGGTGATCAGGGTA
GTGGCTTTGGGGCCACAGGTAAAGCTCCTGTTGGTTCTGTGGTTTCAGTTCCCAGTCAGT
CAAGTGCATCTTCAGACAAGTATGCGGCCCTGGCCGAACTAGACAGCGTTTTCAGCTCTG
CAGCCACCTCCAGTAACGCATATACTTCCACAAGTAATGCTAGCAGTAATGTTTTTGGAA
CAGTGCCAGTGGGTGCTTCTGCACAGACACAGCCTGCTTCTTCGAGTGTGCCTGCTCCAT
TTGGAGCTACACCTTCCACAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTTCCCCAAATCCTCCAGTGCTGATTTGGAACCTTCAATACTTCCCAGAGTCATCAAA
CAGCATCAGCTGTTAGTAAAGTTTCAGCGAACAAAGCTGGTCTACAGACTACAGACAAAT
ATGCAGCGCTTGCTAACTTAGATAATATCTTCAGTGCTGGGCAAGGTGGTGATCAGGGTA
GTGGCTTTGGGGCCACAGGTAAAGCTCCTGTTGGTTCTGTGGTTTCAGTTCCCAGTCAGT
CAAGTGCATCTTCAGACAAGTATGCGGCCCTGGCCGAACTAGACAGCGTTTTCAGCTCTG
CAGCCACCTCCAGTAACGCATATACTTCCACAAGTAATGCTAGCAGTAATGTTTTTGGAA
CAGTGCCAGTGGGTGCTTCTGCACAGACACAGCCTGCTTCTTCGAGTGTGCCTGCTCCAT
TTGGAGCTACACCTTCCACAAATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, + strand, RNAz p=0.693499

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, + strand, RNAz p=0.693499

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-167, gnl|bosTau2|chr2 (69265301-69265468)
               

               
               1-167, gnl|canFam2|chr25 (43286500-43286758)
               

               
               1-167, gnl|danRer3|chrNA (116653689-116653448)
               

               
               1-167, gnl|dasNov1|scaffold_22243 (18615-18368)
               

               
               1-167, gnl|galGal2|chr9 (4160127-4159883)
               

               
               1-167, gnl|hg17|chr2 (228223735-228223993)
               

               
               1-167, gnl|Hg17|chr2 (228223814-228223981)
               

               
               1-167, gnl|loxAfr1|scaffold_12153 (39074-38816)
               

               
               1-167, gnl|mm7|chr1 (83090880-83091136)
               

               
               1-167, gnl|Mm7|chr1 (83090957-83091124)
               

               
               1-167, gnl|monDom2|scaffold_28 (9064767-9065025)
               

               
               1-167, gnl|oryCun1|scaffold_163730 (7336-7077)
               

               
               1-167, gnl|panTro1|chr13 (118820104-118820362)
               

               
               1-167, gnl|rheMac2|chr12 (91426005-91426263)
               

               
               1-167, gnl|rn3|chr9 (82383665-82383921)
               

               
               1-167, gnl|xenTro1|scaffold_108 (636028-635813)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-167, gnl|bosTau2|chr2 (69265301-69265468)
               

               
               1-167, gnl|canFam2|chr25 (43286500-43286758)
               

               
               1-167, gnl|danRer3|chrNA (116653689-116653448)
               

               
               1-167, gnl|dasNov1|scaffold_22243 (18615-18368)
               

               
               1-167, gnl|galGal2|chr9 (4160127-4159883)
               

               
               1-167, gnl|hg17|chr2 (228223735-228223993)
               

               
               1-167, gnl|Hg17|chr2 (228223814-228223981)
               

               
               1-167, gnl|loxAfr1|scaffold_12153 (39074-38816)
               

               
               1-167, gnl|mm7|chr1 (83090880-83091136)
               

               
               1-167, gnl|Mm7|chr1 (83090957-83091124)
               

               
               1-167, gnl|monDom2|scaffold_28 (9064767-9065025)
               

               
               1-167, gnl|oryCun1|scaffold_163730 (7336-7077)
               

               
               1-167, gnl|panTro1|chr13 (118820104-118820362)
               

               
               1-167, gnl|rheMac2|chr12 (91426005-91426263)
               

               
               1-167, gnl|rn3|chr9 (82383665-82383921)
               

               
               1-167, gnl|xenTro1|scaffold_108 (636028-635813)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sme (0.305437)
               

               
               jej (0.197844)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               jej (0.197844)

	1-167, gnl\|bosTau2\|chr2 (69265301-69265468)
	1-167, gnl\|canFam2\|chr25 (43286500-43286758)
	1-167, gnl\|danRer3\|chrNA (116653689-116653448)
	1-167, gnl\|dasNov1\|scaffold_22243 (18615-18368)
	1-167, gnl\|galGal2\|chr9 (4160127-4159883)
	1-167, gnl\|hg17\|chr2 (228223735-228223993)
	1-167, gnl\|Hg17\|chr2 (228223814-228223981)
	1-167, gnl\|loxAfr1\|scaffold_12153 (39074-38816)
	1-167, gnl\|mm7\|chr1 (83090880-83091136)
	1-167, gnl\|Mm7\|chr1 (83090957-83091124)
	1-167, gnl\|monDom2\|scaffold_28 (9064767-9065025)
	1-167, gnl\|oryCun1\|scaffold_163730 (7336-7077)
	1-167, gnl\|panTro1\|chr13 (118820104-118820362)
	1-167, gnl\|rheMac2\|chr12 (91426005-91426263)
	1-167, gnl\|rn3\|chr9 (82383665-82383921)
	1-167, gnl\|xenTro1\|scaffold_108 (636028-635813)