Non-Coding RNA Search

Ss1.1-rjej32b_k16.5

Sequence:


               
               GGCTCTGCGGGACCGCACGTTTCTCCCCATCATCCCCTTGGCCCCCGCATCTCACAGGCA
AAGCCGCCTGGCGTGTGACTCCGCCTCTGGCCGTCAGGCTCCTCCCCCACAAGGCGGAGC
CTTCCCAGAGGTCACAGCCTGTGCTTCTCACATTTCCCCTCTGAACCCTGGGGCGCGCAA
GTGGGCCCAGAGGTGGGACGGCAGCTGAGCAAGTCAGGCTCAACGCACAGCCCACAGAAG
GTCACTTGAGTTTGTTTCATTCTCCGTCTGGGGGGCCACACCCTGGGGTCAGTTCAGGAA
GCTTTCACTGAGCGCCACTGTGCCCTGTGCAAGCGCTGGGGGCCCGCGATGGGAGCAGCC
ACAGTGCCTGACCTTAGGGAACCCTGAGGGTGGAGCCGGGGGACACCCCTCCTCTCTCCA
GGGCCCTGAGATGCCTTGCTGCTCTCGGCCTGAGCCTCTGCACTGTCTGTCATTTAAGAG
AAATGCCTGGGAAGCGGCCCCATTCCCCCGTGATCCCCCTCCCTGTCTGTTTCAGCGACT
GTGAATTGAGGTTAGGAAGGCAAGCTCGCCCTTCGTGTCCGCTCCCTGTCTGCCTTGGAA
ACACATGAAGGACGGCAGATACTGTGAATCCAGCCCTCACAGCCCACTGTGAAAGGGATG
GAGCAGCTGGGAGGTCTCCTAGGTTGAGAGCTGCGGGGGCAGAGGGAAGCGGGGCTGCAG
AGCTCCCCTCCGGGTCTGGGGGTGAAGCCCAAGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTCTGCGGGACCGCACGTTTCTCCCCATCATCCCCTTGGCCCCCGCATCTCACAGGCA
AAGCCGCCTGGCGTGTGACTCCGCCTCTGGCCGTCAGGCTCCTCCCCCACAAGGCGGAGC
CTTCCCAGAGGTCACAGCCTGTGCTTCTCACATTTCCCCTCTGAACCCTGGGGCGCGCAA
GTGGGCCCAGAGGTGGGACGGCAGCTGAGCAAGTCAGGCTCAACGCACAGCCCACAGAAG
GTCACTTGAGTTTGTTTCATTCTCCGTCTGGGGGGCCACACCCTGGGGTCAGTTCAGGAA
GCTTTCACTGAGCGCCACTGTGCCCTGTGCAAGCGCTGGGGGCCCGCGATGGGAGCAGCC
ACAGTGCCTGACCTTAGGGAACCCTGAGGGTGGAGCCGGGGGACACCCCTCCTCTCTCCA
GGGCCCTGAGATGCCTTGCTGCTCTCGGCCTGAGCCTCTGCACTGTCTGTCATTTAAGAG
AAATGCCTGGGAAGCGGCCCCATTCCCCCGTGATCCCCCTCCCTGTCTGTTTCAGCGACT
GTGAATTGAGGTTAGGAAGGCAAGCTCGCCCTTCGTGTCCGCTCCCTGTCTGCCTTGGAA
ACACATGAAGGACGGCAGATACTGTGAATCCAGCCCTCACAGCCCACTGTGAAAGGGATG
GAGCAGCTGGGAGGTCTCCTAGGTTGAGAGCTGCGGGGGCAGAGGGAAGCGGGGCTGCAG
AGCTCCCCTCCGGGTCTGGGGGTGAAGCCCAAGCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               69-700, gnl|bosTau2|chr19 (9142373-9141735)
               

               
               69-700, gnl|Hg17|chr17 (22976295-22976948)
               

               
               69-700, gnl|Mm7|chr11 (79096173-79095529)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-700, gnl|bosTau2|chr19 (9142373-9141735)
               

               
               69-700, gnl|Hg17|chr17 (22976295-22976948)
               

               
               69-700, gnl|Mm7|chr11 (79096173-79095529)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	69-700, gnl\|bosTau2\|chr19 (9142373-9141735)
	69-700, gnl\|Hg17\|chr17 (22976295-22976948)
	69-700, gnl\|Mm7\|chr11 (79096173-79095529)

	mcp (0.170648)
	cje (0.165235)
	pla (0.133672)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)