Ss1.1-rjej34b_d13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGATAAGAAAACCCAAGCCGGGAGTCATGGCAGCCAAACCCAAGCTCTACTACTTCCG TGGCCGGGGCAGGATGGAGTCGATCCGTTGGCTGCTGGCTGCAGCTGGTGTGGAGTTCGA AGAGGAATTTTTTGAAACAAGAGAACAATATGAGAAGTTGAAGAAAGATGGACTCCTGCT TTTTGGCCAGGTGCCTCTGGTTGAAATTGACGGAATGGCACTGACCCAGACGAGAGCCAT CCTCAGCTACCTTGCTGCCAAGTACAACTTGCATGGGAAGGATTTGAAGGAAAGAGTCAG GATCGACATGTACGCGGACGGCACTCTGGACCTCATGATGATGGTGGCATTGGCTGCCTT CAAACCCCCCGGGGAAAAAGAGGAGAACCTGGCTTTAGTGGTGGAGAAAGCGAAAACCCG GTACTTCCCCGTCTTCGAAAAGATTTTGAAAGACCAAGGAGAGGATTTTCTCGTTGGCAA TAAATTCAGCTGGGCAGACATCCAGCTGTTGGAAGCTATTTTAATGATGGAAGAACTTGA TGCTTCTGTTCTTTCTGACTTTCCTCTGCTACAGGCATTTAAAACAAGAATCAGCAACAT CCCAACAATCAAGAAGTTCCTGCAGCCTGGGAGTCAGAGGAAGCCGCCCCCGGACAGCCA CTATGTCAAGGTTGTCAGGAATGTTTTGCAGTTCTAATGCCAGAAGTTTTATGATTGCAG CTTAACCAATCGTAGCATCCACTTGATGTCGCCCATGGAAGCAAACTGTAGATTCTAAGA GTAAAGTGCAGATTCTAGGAGTAAAGTGTCTGAAAAACACAAAACCATATTATCATCAGT GGCAACTGCCAATTAAATGCAATCTAAAACCAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGATAAGAAAACCCAAGCCGGGAGTCATGGCAGCCAAACCCAAGCTCTACTACTTCCG TGGCCGGGGCAGGATGGAGTCGATCCGTTGGCTGCTGGCTGCAGCTGGTGTGGAGTTCGA AGAGGAATTTTTTGAAACAAGAGAACAATATGAGAAGTTGAAGAAAGATGGACTCCTGCT TTTTGGCCAGGTGCCTCTGGTTGAAATTGACGGAATGGCACTGACCCAGACGAGAGCCAT CCTCAGCTACCTTGCTGCCAAGTACAACTTGCATGGGAAGGATTTGAAGGAAAGAGTCAG GATCGACATGTACGCGGACGGCACTCTGGACCTCATGATGATGGTGGCATTGGCTGCCTT CAAACCCCCCGGGGAAAAAGAGGAGAACCTGGCTTTAGTGGTGGAGAAAGCGAAAACCCG GTACTTCCCCGTCTTCGAAAAGATTTTGAAAGACCAAGGAGAGGATTTTCTCGTTGGCAA TAAATTCAGCTGGGCAGACATCCAGCTGTTGGAAGCTATTTTAATGATGGAAGAACTTGA TGCTTCTGTTCTTTCTGACTTTCCTCTGCTACAGGCATTTAAAACAAGAATCAGCAACAT CCCAACAATCAAGAAGTTCCTGCAGCCTGGGAGTCAGAGGAAGCCGCCCCCGGACAGCCA CTATGTCAAGGTTGTCAGGAATGTTTTGCAGTTCTAATGCCAGAAGTTTTATGATTGCAG CTTAACCAATCGTAGCATCCACTTGATGTCGCCCATGGAAGCAAACTGTAGATTCTAAGA GTAAAGTGCAGATTCTAGGAGTAAAGTGTCTGAAAAACACAAAACCATATTATCATCAGT GGCAACTGCCAATTAAATGCAATCTAAAACCAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 8-115, gnl|bosTau2|chr23 (22698515-22698622) | |
| 8-115, gnl|canFam2|chr12 (23415265-23415328) | |
| 8-115, gnl|canFam2|chr12 (23415212-23415298) | |
| 8-115, gnl|danRer3|chr13 (978330-978258) | |
| 8-115, gnl|dasNov1|scaffold_152009 (1854-1912) | |
| 8-115, gnl|dasNov1|scaffold_2127 (143532-143446) | |
| 8-115, gnl|echTel1|scaffold_119858 (638-559) | |
| 8-115, gnl|echTel1|scaffold_119858 (681-595) | |
| 8-115, gnl|hg17|chr15 (25527934-25528020) | |
| 8-115, gnl|hg17|chr2 (196754108-196754194) | |
| 8-115, gnl|Hg17|chr6 (52930345-52930236) | |
| 8-115, gnl|loxAfr1|scaffold_54589 (6340-6414) | |
| 8-115, gnl|loxAfr1|scaffold_54589 (6298-6384) | |
| 8-115, gnl|mm7|chr11 (90219259-90219317) | |
| 8-115, gnl|mm7|chr11 (90219223-90219295) | |
| 8-115, gnl|Mm7|chr9 (78241226-78241334) | |
| 8-115, gnl|monDom2|scaffold_27 (18709771-18709685) | |
| 8-115, gnl|oryCun1|scaffold_174269 (16900-16986) | |
| 8-115, gnl|panTro1|chr13 (86660627-86660713) | |
| 8-115, gnl|panTro1|chr16 (21258129-21258043) | |
| 8-115, gnl|rheMac2|chr12 (59707307-59707393) | |
| 8-115, gnl|rheMac2|chr7 (6513755-6513841) | |
| 8-115, gnl|rn3|chr10 (71304206-71304292) | |
| 8-115, gnl|rn3|chr3 (118384044-118383986) | |
| 296-440, gnl|bosTau2|chr23 (22706272-22706416) | |
| 296-440, gnl|canFam2|chr12 (23409197-23409365) | |
| 296-440, gnl|dasNov1|scaffold_2127 (149887-149700) | |
| 296-440, gnl|echTel1|scaffold_295388 (1978-2165) | |
| 296-440, gnl|hg17|chr6 (52925156-52925340) | |
| 296-440, gnl|Hg17|chr6 (52925336-52925192) | |
| 296-440, gnl|loxAfr1|scaffold_72919 (368-184) | |
| 296-440, gnl|mm7|chr9 (78248964-78248796) | |
| 296-440, gnl|Mm7|chr9 (78248798-78248942) | |
| 296-440, gnl|monDom2|scaffold_0 (184301715-184301536) | |
| 296-440, gnl|oryCun1|scaffold_206578 (64559-64740) | |
| 296-440, gnl|panTro1|chr5 (53948413-53948597) | |
| 296-440, gnl|rheMac2|chr4 (52550871-52551053) | |
| 296-440, gnl|rn3|chr8 (83197930-83197762) | |
| 296-440, gnl|xenTro1|scaffold_354 (470147-470308) | |
| 572-797, gnl|bosTau2|chr23 (22710601-22710835) | |
| 572-797, gnl|Hg17|chr6 (52912776-52912568) | |
| 572-797, gnl|Mm7|chr9 (78251945-78252155) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-115, gnl|bosTau2|chr23 (22698515-22698622) | |
| 8-115, gnl|canFam2|chr12 (23415265-23415328) | |
| 8-115, gnl|canFam2|chr12 (23415212-23415298) | |
| 8-115, gnl|danRer3|chr13 (978330-978258) | |
| 8-115, gnl|dasNov1|scaffold_152009 (1854-1912) | |
| 8-115, gnl|dasNov1|scaffold_2127 (143532-143446) | |
| 8-115, gnl|echTel1|scaffold_119858 (638-559) | |
| 8-115, gnl|echTel1|scaffold_119858 (681-595) | |
| 8-115, gnl|hg17|chr15 (25527934-25528020) | |
| 8-115, gnl|hg17|chr2 (196754108-196754194) | |
| 8-115, gnl|Hg17|chr6 (52930345-52930236) | |
| 8-115, gnl|loxAfr1|scaffold_54589 (6340-6414) | |
| 8-115, gnl|loxAfr1|scaffold_54589 (6298-6384) | |
| 8-115, gnl|mm7|chr11 (90219259-90219317) | |
| 8-115, gnl|mm7|chr11 (90219223-90219295) | |
| 8-115, gnl|Mm7|chr9 (78241226-78241334) | |
| 8-115, gnl|monDom2|scaffold_27 (18709771-18709685) | |
| 8-115, gnl|oryCun1|scaffold_174269 (16900-16986) | |
| 8-115, gnl|panTro1|chr13 (86660627-86660713) | |
| 8-115, gnl|panTro1|chr16 (21258129-21258043) | |
| 8-115, gnl|rheMac2|chr12 (59707307-59707393) | |
| 8-115, gnl|rheMac2|chr7 (6513755-6513841) | |
| 8-115, gnl|rn3|chr10 (71304206-71304292) | |
| 8-115, gnl|rn3|chr3 (118384044-118383986) | |
| 296-440, gnl|bosTau2|chr23 (22706272-22706416) | |
| 296-440, gnl|canFam2|chr12 (23409197-23409365) | |
| 296-440, gnl|dasNov1|scaffold_2127 (149887-149700) | |
| 296-440, gnl|echTel1|scaffold_295388 (1978-2165) | |
| 296-440, gnl|hg17|chr6 (52925156-52925340) | |
| 296-440, gnl|Hg17|chr6 (52925336-52925192) | |
| 296-440, gnl|loxAfr1|scaffold_72919 (368-184) | |
| 296-440, gnl|mm7|chr9 (78248964-78248796) | |
| 296-440, gnl|Mm7|chr9 (78248798-78248942) | |
| 296-440, gnl|monDom2|scaffold_0 (184301715-184301536) | |
| 296-440, gnl|oryCun1|scaffold_206578 (64559-64740) | |
| 296-440, gnl|panTro1|chr5 (53948413-53948597) | |
| 296-440, gnl|rheMac2|chr4 (52550871-52551053) | |
| 296-440, gnl|rn3|chr8 (83197930-83197762) | |
| 296-440, gnl|xenTro1|scaffold_354 (470147-470308) | |
| 572-797, gnl|bosTau2|chr23 (22710601-22710835) | |
| 572-797, gnl|Hg17|chr6 (52912776-52912568) | |
| 572-797, gnl|Mm7|chr9 (78251945-78252155) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| nje (0.8296) | |
| nmm (0.796813) | |
| tes (0.623441) | |
| ton (0.526501) | |
| nco (0.323468) | |
| ova (0.258264) | |
| cov (0.132153) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.8296) | |
| nmm (0.796813) | |
| tes (0.623441) | |
| ton (0.526501) | |
| nco (0.323468) | |
| ova (0.258264) | |
| cov (0.132153) | |
| jej (0.0989218) | |
| eje (0.0988338) |