Ss1.1-rjej34b_f1.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTCCCTGAGTGAGCGCCGGTGGTGGGGCGGGGAGCCGCGCGGCAGCCGCAGGTGGGGC TGCTCGCAGCCAGGGTTCCAGCCCCGGAGCCCCCAGGATGCCCCGTGGGGACTCCGAGCA GGTGCGCTACTGCGCGCGCCTCTCCTACCTCTGGCTCAAGTTCTCGCTGGTCATCTACTC CACAGTGTTCTGGCTGATTGGGGGCCTGGTCCTGTCCGTGGGCATCTATGCAGAGGTCGA GAGGCAGAAATACAAAACCCTGGAAAGTGCCTTTCTGGCCCCAGCCATCATCCTCATCCT CCTGGGCGTCATCATGTTCATTGTGTCCTTCGTCGGCGTGCTGGCTTCCCTCCGAGACAA CCTGTGCCTTCTCCAAGCGTTTATGTACATCCTTGGTCTCTGCCTCATAATCGAGCTCAT TGGTGGCGTGGTGGCCTTGATCTTCCGGAACCAGACCATCGACTTTCTGAATGACAACAT TCGAAGAGGCATCGAGAACTATTATGATGACCTGGACTTCAAAAACATCATGGACTTTGT TCAGAAGGAGTTTAAGTGCTGTGGCGGGGAAGACTACCGAGACTGGAGCAAAAACCAGTA CCACGACTGCAGCGCCCCGGGACCCCTGGCCTGCGGGGTGCCCTACACCTGCTGCTTCAG AAACACGACAGAAGTTGTCAACACCATGTGTGGCTACAAAACTATTGACAAGGAGCGCCT CAGCGTGCAGAACATCATCTACGTGCGGGGCTGCACCAACGCCGTGCTCATCTGGTTCAT GGACAACTACACCATCATGGCCGGGCTCCTGCTGGGCATCCTGCTGCCCCAGTTCCTGGG GGTGCTGCTGACATTCCTGTACATCACCCGCGTGGAGGACATCATCATGGAGCACTCTGT CACCGACGGGCTCCTGGGGCCTGGCGTCAAGCCCAGTGCGGAGGCAGCAGGTGCAGGCTG CTGCATGTGCTACCCCAATTAGGGCTGTGGCCTGGGGCAGCGGCTCCAGAAGGACCGTGA CAGAAGGACAGCTCGGCTCAGGCCACGTCGTGGGGGCCGGACAGGACCGCAGCCCCTCTC TCCATGTTCGGCACTGACTGAAGCCTTGGCTGTATTCACTCAGGGCTCCCAGGTCACCTT GGGACCCTGTGCCACCTGTGCTGATGGGGGGTGGGGAGCAGGGTGTCCCTTCTCCAGGCT TGGGCCCCCTGGGAAGGGGGAGCTCGGCGCTGGGCTCAGGGCCCGTTTCACTTCTGATAG TGCCTTCGCCTTGCTGTTTGTGTCCCTTTGAGGGCAGTTTTGTCATCCGAGAGGGAGGGG AGCCTGAGTGCCCCGTGCTGAAGGAGGGGAGAGGAGCATCCCCCGGGGCCCTGTTCCTCA GCCTTACCCCTGAGGCCACATGGGGCCCATTTCTCAGACTCCCCAGTGCCTTGAGCCCTC CTCAGGGCTGCTGCTTTGCTGACCCTATTTTTTATGTGATTTTTGTAACATTCGTTTTGT ACACAGTTAACAGGAGTTTCTGACTAATCAAAGCTGGATCCTCCACCCCCACCCGCCTCA ACTTCCCCTGTTCCTTTCTTGCCCCTCCAAACCAGTTTATTAATCAAACAATAAAGATGT GATTTTTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTCCCTGAGTGAGCGCCGGTGGTGGGGCGGGGAGCCGCGCGGCAGCCGCAGGTGGGGC TGCTCGCAGCCAGGGTTCCAGCCCCGGAGCCCCCAGGATGCCCCGTGGGGACTCCGAGCA GGTGCGCTACTGCGCGCGCCTCTCCTACCTCTGGCTCAAGTTCTCGCTGGTCATCTACTC CACAGTGTTCTGGCTGATTGGGGGCCTGGTCCTGTCCGTGGGCATCTATGCAGAGGTCGA GAGGCAGAAATACAAAACCCTGGAAAGTGCCTTTCTGGCCCCAGCCATCATCCTCATCCT CCTGGGCGTCATCATGTTCATTGTGTCCTTCGTCGGCGTGCTGGCTTCCCTCCGAGACAA CCTGTGCCTTCTCCAAGCGTTTATGTACATCCTTGGTCTCTGCCTCATAATCGAGCTCAT TGGTGGCGTGGTGGCCTTGATCTTCCGGAACCAGACCATCGACTTTCTGAATGACAACAT TCGAAGAGGCATCGAGAACTATTATGATGACCTGGACTTCAAAAACATCATGGACTTTGT TCAGAAGGAGTTTAAGTGCTGTGGCGGGGAAGACTACCGAGACTGGAGCAAAAACCAGTA CCACGACTGCAGCGCCCCGGGACCCCTGGCCTGCGGGGTGCCCTACACCTGCTGCTTCAG AAACACGACAGAAGTTGTCAACACCATGTGTGGCTACAAAACTATTGACAAGGAGCGCCT CAGCGTGCAGAACATCATCTACGTGCGGGGCTGCACCAACGCCGTGCTCATCTGGTTCAT GGACAACTACACCATCATGGCCGGGCTCCTGCTGGGCATCCTGCTGCCCCAGTTCCTGGG GGTGCTGCTGACATTCCTGTACATCACCCGCGTGGAGGACATCATCATGGAGCACTCTGT CACCGACGGGCTCCTGGGGCCTGGCGTCAAGCCCAGTGCGGAGGCAGCAGGTGCAGGCTG CTGCATGTGCTACCCCAATTAGGGCTGTGGCCTGGGGCAGCGGCTCCAGAAGGACCGTGA CAGAAGGACAGCTCGGCTCAGGCCACGTCGTGGGGGCCGGACAGGACCGCAGCCCCTCTC TCCATGTTCGGCACTGACTGAAGCCTTGGCTGTATTCACTCAGGGCTCCCAGGTCACCTT GGGACCCTGTGCCACCTGTGCTGATGGGGGGTGGGGAGCAGGGTGTCCCTTCTCCAGGCT TGGGCCCCCTGGGAAGGGGGAGCTCGGCGCTGGGCTCAGGGCCCGTTTCACTTCTGATAG TGCCTTCGCCTTGCTGTTTGTGTCCCTTTGAGGGCAGTTTTGTCATCCGAGAGGGAGGGG AGCCTGAGTGCCCCGTGCTGAAGGAGGGGAGAGGAGCATCCCCCGGGGCCCTGTTCCTCA GCCTTACCCCTGAGGCCACATGGGGCCCATTTCTCAGACTCCCCAGTGCCTTGAGCCCTC CTCAGGGCTGCTGCTTTGCTGACCCTATTTTTTATGTGATTTTTGTAACATTCGTTTTGT ACACAGTTAACAGGAGTTTCTGACTAATCAAAGCTGGATCCTCCACCCCCACCCGCCTCA ACTTCCCCTGTTCCTTTCTTGCCCCTCCAAACCAGTTTATTAATCAAACAATAAAGATGT GATTTTTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1245-1497, + strand, RNAz p=0.885572 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1245-1497, + strand, RNAz p=0.885572 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_012339, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 195-379, gnl|bosTau2|chr28 (20039260-20039076) | |
| 195-379, gnl|Hg17|chr10 (70913454-70913638) | |
| 195-379, gnl|Mm7|chr10 (61722002-61721818) | |
| 549-667, gnl|bosTau2|chr28 (20025207-20025090) | |
| 549-667, gnl|canFam2|chr4 (23805160-23805297) | |
| 549-667, gnl|danRer3|chr13 (26544680-26544568) | |
| 549-667, gnl|dasNov1|scaffold_170675 (3207-3064) | |
| 549-667, gnl|echTel1|scaffold_244305 (9318-9170) | |
| 549-667, gnl|fr1|chrUn (207691137-207691265) | |
| 549-667, gnl|galGal2|chr6 (10218198-10218330) | |
| 549-667, gnl|hg17|chr10 (70928040-70928189) | |
| 549-667, gnl|Hg17|chr10 (70928040-70928158) | |
| 549-667, gnl|loxAfr1|scaffold_7504 (55149-55000) | |
| 549-667, gnl|mm7|chr10 (61710329-61710188) | |
| 549-667, gnl|Mm7|chr10 (61710324-61710206) | |
| 549-667, gnl|monDom2|scaffold_41 (21236812-21236688) | |
| 549-667, gnl|oryCun1|scaffold_200817 (40871-41018) | |
| 549-667, gnl|panTro1|chr8 (72085582-72085732) | |
| 549-667, gnl|rheMac2|chr9 (67528876-67528724) | |
| 549-667, gnl|tetNig1|chr5 (3712200-3712067) | |
| 549-667, gnl|xenTro1|scaffold_572 (751658-751807) | |
| 820-1130, gnl|bosTau2|chr28 (20017161-20016846) | |
| 820-1130, gnl|Hg17|chr10 (70936579-70936889) | |
| 820-1130, gnl|Mm7|chr10 (61706915-61706603) | |
| 1167-1632, gnl|bosTau2|chr28 (20016780-20016332) | |
| 1167-1632, gnl|Hg17|chr10 (70936973-70937427) | |
| 1167-1632, gnl|Mm7|chr10 (61706551-61706109) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 195-379, gnl|bosTau2|chr28 (20039260-20039076) | |
| 195-379, gnl|Hg17|chr10 (70913454-70913638) | |
| 195-379, gnl|Mm7|chr10 (61722002-61721818) | |
| 549-667, gnl|bosTau2|chr28 (20025207-20025090) | |
| 549-667, gnl|canFam2|chr4 (23805160-23805297) | |
| 549-667, gnl|danRer3|chr13 (26544680-26544568) | |
| 549-667, gnl|dasNov1|scaffold_170675 (3207-3064) | |
| 549-667, gnl|echTel1|scaffold_244305 (9318-9170) | |
| 549-667, gnl|fr1|chrUn (207691137-207691265) | |
| 549-667, gnl|galGal2|chr6 (10218198-10218330) | |
| 549-667, gnl|hg17|chr10 (70928040-70928189) | |
| 549-667, gnl|Hg17|chr10 (70928040-70928158) | |
| 549-667, gnl|loxAfr1|scaffold_7504 (55149-55000) | |
| 549-667, gnl|mm7|chr10 (61710329-61710188) | |
| 549-667, gnl|Mm7|chr10 (61710324-61710206) | |
| 549-667, gnl|monDom2|scaffold_41 (21236812-21236688) | |
| 549-667, gnl|oryCun1|scaffold_200817 (40871-41018) | |
| 549-667, gnl|panTro1|chr8 (72085582-72085732) | |
| 549-667, gnl|rheMac2|chr9 (67528876-67528724) | |
| 549-667, gnl|tetNig1|chr5 (3712200-3712067) | |
| 549-667, gnl|xenTro1|scaffold_572 (751658-751807) | |
| 820-1130, gnl|bosTau2|chr28 (20017161-20016846) | |
| 820-1130, gnl|Hg17|chr10 (70936579-70936889) | |
| 820-1130, gnl|Mm7|chr10 (61706915-61706603) | |
| 1167-1632, gnl|bosTau2|chr28 (20016780-20016332) | |
| 1167-1632, gnl|Hg17|chr10 (70936973-70937427) | |
| 1167-1632, gnl|Mm7|chr10 (61706551-61706109) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| pty (0.285429) | |
| nms (0.213858) | |
| jej (0.197844) | |
| col (0.195008) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| hyp (0.142837) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.285429) | |
| nms (0.213858) | |
| jej (0.197844) | |
| col (0.195008) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| hyp (0.142837) |