Non-Coding RNA Search

Ss1.1-rjej35b_d10.5

Sequence:


               
               CCTCCCTGTGCTCCGGGCCGCCGGGGCCACCTACAGGTTTGAGGAGGAGAACCAGAGGCT
CCTGGAGCTCAACCAGAGGTGCCAGTTTGCCTCCAGTGCCACCATGCAGTGGCTGGACAT
CCGGCTACAGCTCATGGGGGCCACCGTGGTCAGTGCCATTGCAGGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCCTGTGCTCCGGGCCGCCGGGGCCACCTACAGGTTTGAGGAGGAGAACCAGAGGCT
CCTGGAGCTCAACCAGAGGTGCCAGTTTGCCTCCAGTGCCACCATGCAGTGGCTGGACAT
CCGGCTACAGCTCATGGGGGCCACCGTGGTCAGTGCCATTGCAGGCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               25-168, - strand, RNAz p=0.862463

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-168, - strand, RNAz p=0.862463

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               25-168, gnl|bosTau2|chr23 (17271930-17272073)
               

               
               25-168, gnl|canFam2|chr12 (14919165-14919365)
               

               
               25-168, gnl|danRer3|chr11 (13971990-13972163)
               

               
               25-168, gnl|echTel1|scaffold_296406 (10019-10218)
               

               
               25-168, gnl|fr1|chrUn (145003659-145003842)
               

               
               25-168, gnl|galGal2|chr3 (27295118-27294919)
               

               
               25-168, gnl|hg17|chr6 (43521967-43522166)
               

               
               25-168, gnl|Hg17|chr6 (43521981-43522124)
               

               
               25-168, gnl|loxAfr1|scaffold_15423 (21626-21427)
               

               
               25-168, gnl|mm7|chr17 (44435911-44435711)
               

               
               25-168, gnl|Mm7|chr17 (44435894-44435751)
               

               
               25-168, gnl|monDom2|scaffold_0 (198096266-198096079)
               

               
               25-168, gnl|panTro1|chr5 (44121304-44121505)
               

               
               25-168, gnl|rheMac2|chr4 (43350158-43350357)
               

               
               25-168, gnl|rn3|chr9 (10233522-10233722)
               

               
               25-168, gnl|tetNig1|chr18 (10094241-10094430)
               

               
               25-168, gnl|xenTro1|scaffold_1241 (129829-130028)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-168, gnl|bosTau2|chr23 (17271930-17272073)
               

               
               25-168, gnl|canFam2|chr12 (14919165-14919365)
               

               
               25-168, gnl|danRer3|chr11 (13971990-13972163)
               

               
               25-168, gnl|echTel1|scaffold_296406 (10019-10218)
               

               
               25-168, gnl|fr1|chrUn (145003659-145003842)
               

               
               25-168, gnl|galGal2|chr3 (27295118-27294919)
               

               
               25-168, gnl|hg17|chr6 (43521967-43522166)
               

               
               25-168, gnl|Hg17|chr6 (43521981-43522124)
               

               
               25-168, gnl|loxAfr1|scaffold_15423 (21626-21427)
               

               
               25-168, gnl|mm7|chr17 (44435911-44435711)
               

               
               25-168, gnl|Mm7|chr17 (44435894-44435751)
               

               
               25-168, gnl|monDom2|scaffold_0 (198096266-198096079)
               

               
               25-168, gnl|panTro1|chr5 (44121304-44121505)
               

               
               25-168, gnl|rheMac2|chr4 (43350158-43350357)
               

               
               25-168, gnl|rn3|chr9 (10233522-10233722)
               

               
               25-168, gnl|tetNig1|chr18 (10094241-10094430)
               

               
               25-168, gnl|xenTro1|scaffold_1241 (129829-130028)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	25-168, gnl\|bosTau2\|chr23 (17271930-17272073)
	25-168, gnl\|canFam2\|chr12 (14919165-14919365)
	25-168, gnl\|danRer3\|chr11 (13971990-13972163)
	25-168, gnl\|echTel1\|scaffold_296406 (10019-10218)
	25-168, gnl\|fr1\|chrUn (145003659-145003842)
	25-168, gnl\|galGal2\|chr3 (27295118-27294919)
	25-168, gnl\|hg17\|chr6 (43521967-43522166)
	25-168, gnl\|Hg17\|chr6 (43521981-43522124)
	25-168, gnl\|loxAfr1\|scaffold_15423 (21626-21427)
	25-168, gnl\|mm7\|chr17 (44435911-44435711)
	25-168, gnl\|Mm7\|chr17 (44435894-44435751)
	25-168, gnl\|monDom2\|scaffold_0 (198096266-198096079)
	25-168, gnl\|panTro1\|chr5 (44121304-44121505)
	25-168, gnl\|rheMac2\|chr4 (43350158-43350357)
	25-168, gnl\|rn3\|chr9 (10233522-10233722)
	25-168, gnl\|tetNig1\|chr18 (10094241-10094430)
	25-168, gnl\|xenTro1\|scaffold_1241 (129829-130028)