Ss1.1-rjej35b_g5.5.5
|
TTTTTTTTTTTTTTTCTCCCTGGTTGCTTGAAGGCCAGCCGCCATCATGAACGACACAGT
CACTATCCGGACCAGGAAGTTCATGACCAACCGACTACTTCAGCGGAAACAAATGGTCAT
TGATGTCCTTCACCCTGGGAAGGCAACGGTACCTAAGACAGAAATTCGGGAAAAACTAGC
CAAAATGTACAAGACTACACCAGATGTCATCTTTGTCTTTGGATTCAGAACCCATTTTGG
TGGTGGCAAGACAACCGGCTTTGGCATGATTTATGATTCCTTGGATTATGCAAAGAAAAA
TGAGCCCAAACACAGGCTTGCAAGACACGGCTTGTATGAGAAGAAAAAGACCTCAAGAAA
ACAGAGAAAAGAACGCAAGAACAGAATGAAGAAAGTTAGGGGAACTGCAAAGGCCAATGT
TGGTGCTGGCAAAAAGTGAGCTGGAGATTGGACAACAGAAGGAGTAAAGATTCTGCAGTG
ACTGTGTCTGTGGTGATTGTGCAAAATTTTCATGAGGGGCCCAATAAACTAAGAACTTTT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTTTTTTTTTTTTCTCCCTGGTTGCTTGAAGGCCAGCCGCCATCATGAACGACACAGT
CACTATCCGGACCAGGAAGTTCATGACCAACCGACTACTTCAGCGGAAACAAATGGTCAT
TGATGTCCTTCACCCTGGGAAGGCAACGGTACCTAAGACAGAAATTCGGGAAAAACTAGC
CAAAATGTACAAGACTACACCAGATGTCATCTTTGTCTTTGGATTCAGAACCCATTTTGG
TGGTGGCAAGACAACCGGCTTTGGCATGATTTATGATTCCTTGGATTATGCAAAGAAAAA
TGAGCCCAAACACAGGCTTGCAAGACACGGCTTGTATGAGAAGAAAAAGACCTCAAGAAA
ACAGAGAAAAGAACGCAAGAACAGAATGAAGAAAGTTAGGGGAACTGCAAAGGCCAATGT
TGGTGCTGGCAAAAAGTGAGCTGGAGATTGGACAACAGAAGGAGTAAAGATTCTGCAGTG
ACTGTGTCTGTGGTGATTGTGCAAAATTTTCATGAGGGGCCCAATAAACTAAGAACTTTT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
mgp (13.6102) |
|
sag (12.7901) |
|
ova (10.4597) |
|
aor (8.3968) |
|
hea (8.38446) |
|
csk (7.88177) |
|
thg (7.73425) |
|
cmu (7.64212) |
|
vin (6.9837) |
|
rec (6.57667) |
|
ssp (6.23391) |
|
isp (5.86466) |
|
mgm (3.96754) |
|
spc (3.85444) |
|
cbe (3.82775) |
|
bla (3.60607) |
|
mga (3.52451) |
|
nca (3.42184) |
|
mcp (3.41297) |
|
lnt (3.13078) |
|
nco (3.07294) |
|
sto (3.057) |
|
nms (2.99401) |
|
eje (2.86618) |
|
sme (2.74893) |
|
pty (2.71157) |
|
sin (2.62421) |
|
fat (2.50627) |
|
nje (2.4888) |
|
pgl (2.48815) |
|
gul (2.48624) |
|
fty (2.46175) |
|
bfe (2.39772) |
|
lyg (2.26274) |
|
hlv (2.08885) |
|
jca (2.05128) |
|
pro (2.04813) |
|
eep (1.96102) |
|
elu (1.92678) |
|
eye (1.87553) |
|
ecc (1.84056) |
|
eru (1.80072) |
|
ill (1.75593) |
|
col (1.75507) |
|
nmm (1.72643) |
|
fhi (1.69578) |
|
amn (1.67084) |
|
sug (1.65479) |
|
pan (1.65172) |
|
ese (1.64453) |
|
ece (1.60514) |
|
nbm (1.58919) |
|
med (1.51128) |
|
ski (1.46735) |
|
kid (1.42709) |
|
jej (1.3849) |
|
fce (1.35796) |
|
nlu (1.34177) |
|
ebs (1.30131) |
|
nep (1.28747) |
|
fcc (1.18671) |
|
cte (1.17096) |
|
ute (1.06228) |
|
fbs (1.05208) |
|
duo (1.03681) |
|
hyp (0.999857) |
|
fco (0.943248) |
|
liv (0.877706) |
|
eli (0.759071) |
|
cly (0.723851) |
|
che (0.68157) |
|
cut (0.679694) |
|
tra (0.61546) |
|
fli (0.608643) |
|
cag (0.604778) |
|
clu (0.598229) |
|
lin (0.436808) |
|
mas (0.42061) |
|
tes (0.415628) |
|
ret (0.3862) |
|
cki (0.330469) |
|
csp (0.322373) |
|
lun (0.300978) |
|
cga (0.279096) |
|
ste (0.270416) |
|
ton (0.1755) |
|
cje (0.165235) |
|
tbr (0.154178) |
|
cli (0.152812) |
|
cty (0.10408) |
|
ldo (0.0970026) |
|
mgp (13.6102) |
|
sag (12.7901) |
|
ova (10.4597) |
|
aor (8.3968) |
|
hea (8.38446) |
|
csk (7.88177) |
|
thg (7.73425) |
|
cmu (7.64212) |
|
vin (6.9837) |
|
rec (6.57667) |
|
ssp (6.23391) |
|
isp (5.86466) |
|
mgm (3.96754) |
|
spc (3.85444) |
|
cbe (3.82775) |
|
bla (3.60607) |
|
mga (3.52451) |
|
nca (3.42184) |
|
mcp (3.41297) |
|
lnt (3.13078) |
|
nco (3.07294) |
|
sto (3.057) |
|
nms (2.99401) |
|
eje (2.86618) |
|
sme (2.74893) |
|
pty (2.71157) |
|
sin (2.62421) |
|
fat (2.50627) |
|
nje (2.4888) |
|
pgl (2.48815) |
|
gul (2.48624) |
|
fty (2.46175) |
|
bfe (2.39772) |
|
lyg (2.26274) |
|
hlv (2.08885) |
|
jca (2.05128) |
|
pro (2.04813) |
|
eep (1.96102) |
|
elu (1.92678) |
|
eye (1.87553) |
|
ecc (1.84056) |
|
eru (1.80072) |
|
ill (1.75593) |
|
col (1.75507) |
|
nmm (1.72643) |
|
fhi (1.69578) |
|
amn (1.67084) |
|
sug (1.65479) |
|
pan (1.65172) |
|
ese (1.64453) |
|
ece (1.60514) |
|
nbm (1.58919) |
|
med (1.51128) |
|
ski (1.46735) |
|
kid (1.42709) |
|
jej (1.3849) |
|
fce (1.35796) |
|
nlu (1.34177) |
|
ebs (1.30131) |
|
nep (1.28747) |
|
fcc (1.18671) |
|
cte (1.17096) |
|
ute (1.06228) |
|
fbs (1.05208) |
|
duo (1.03681) |
|
hyp (0.999857) |
|
fco (0.943248) |
|
liv (0.877706) |
|
eli (0.759071) |
|
cly (0.723851) |
|
che (0.68157) |
|
cut (0.679694) |
|
tra (0.61546) |
|
fli (0.608643) |
|
cag (0.604778) |
|
clu (0.598229) |
|
lin (0.436808) |
|
mas (0.42061) |
|
tes (0.415628) |
|
ret (0.3862) |
|
cki (0.330469) |
|
csp (0.322373) |
|
lun (0.300978) |
|
cga (0.279096) |
|
ste (0.270416) |
|
ton (0.1755) |
|
cje (0.165235) |
|
tbr (0.154178) |
|
cli (0.152812) |
|
cty (0.10408) |
|
ldo (0.0970026) |
