Ss1.1-rjej35b_i14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATAACAATGGAGACATTTCAGAAAAATTACCTGGCGGCGTGCCTGACAGCAAATGCCAT CAGCTTCTTCTGTGTGCTCTGTGGCCTCTTTGTCATCGCCAAGGATCTCTTTCTGGAGAG CCCATTTGACTTCCCTGTCTGGAAACCATACCCCAACGACACAGTCCACATCCAGAGGCT GGTGCTGGCCCTGCTCTGCGTCACCTGCCTGGAGGTCTTCCTGCCGGGGCTCATGGCCAT CCTGGCTTATAGGGATACCCGCCTGGCTGCAGAGAAGGATGACCTGTCCCTTGGCCCTGA CATGCTGTTGGAGCTCAGGGGGTCTCCGATGACACCTCCACCATCCTATGACGATGTGAC TAAAGGCAACGGGTGGCAGGAGCAGAAGCAGATGTGAAGAGGCACTGGCTCCACGCACCA TCAGAATTCACCCACTGGTCCCTTGTCCTGGACAGATTAAGGACCAATTCCAAGGGGCGG TTACCAGAAGGGGGCAAACGGTACCATGGCTAAAAACGTCTGCCCCATGCTGGTGGCCAG GGAGGGGAAGTCCCCATTCTGTCTGGCATGGGAGGGACCTCCAGGTCCCCACGCCCCGTA ACATCCCAGCTGGACCAGAACACAACTGGGTCCTGCCCACCCACCCAGGCAGACACGGGA ACAGACCCCTGGGTCCGCAGCCCCCTCCCCCACCCTCCTTGTCTGCTTCCCCCAGTCCCT GGTGGGCACATAGACATCCTGTCCACGTGGGGCTGTGCCTGAAGAGGAGAAGGGTCCTCA GAGCCCAGATGGGCACCGTTTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATAACAATGGAGACATTTCAGAAAAATTACCTGGCGGCGTGCCTGACAGCAAATGCCAT CAGCTTCTTCTGTGTGCTCTGTGGCCTCTTTGTCATCGCCAAGGATCTCTTTCTGGAGAG CCCATTTGACTTCCCTGTCTGGAAACCATACCCCAACGACACAGTCCACATCCAGAGGCT GGTGCTGGCCCTGCTCTGCGTCACCTGCCTGGAGGTCTTCCTGCCGGGGCTCATGGCCAT CCTGGCTTATAGGGATACCCGCCTGGCTGCAGAGAAGGATGACCTGTCCCTTGGCCCTGA CATGCTGTTGGAGCTCAGGGGGTCTCCGATGACACCTCCACCATCCTATGACGATGTGAC TAAAGGCAACGGGTGGCAGGAGCAGAAGCAGATGTGAAGAGGCACTGGCTCCACGCACCA TCAGAATTCACCCACTGGTCCCTTGTCCTGGACAGATTAAGGACCAATTCCAAGGGGCGG TTACCAGAAGGGGGCAAACGGTACCATGGCTAAAAACGTCTGCCCCATGCTGGTGGCCAG GGAGGGGAAGTCCCCATTCTGTCTGGCATGGGAGGGACCTCCAGGTCCCCACGCCCCGTA ACATCCCAGCTGGACCAGAACACAACTGGGTCCTGCCCACCCACCCAGGCAGACACGGGA ACAGACCCCTGGGTCCGCAGCCCCCTCCCCCACCCTCCTTGTCTGCTTCCCCCAGTCCCT GGTGGGCACATAGACATCCTGTCCACGTGGGGCTGTGCCTGAAGAGGAGAAGGGTCCTCA GAGCCCAGATGGGCACCGTTTTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 426-581, - strand, RNAz p=0.999948 | |
| 430-569, - strand, RNAz p=0.933271 | |
| 610-767, - strand, RNAz p=0.969385 | |
| 635-753, - strand, RNAz p=0.661432 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 426-581, - strand, RNAz p=0.999948 | |
| 430-569, - strand, RNAz p=0.933271 | |
| 610-767, - strand, RNAz p=0.969385 | |
| 635-753, - strand, RNAz p=0.661432 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 40-165, gnl|bosTau2|chr29 (28450556-28450431) | |
| 40-165, gnl|canFam2|chr18 (58506104-58505319) | |
| 40-165, gnl|echTel1|scaffold_292951 (23-673) | |
| 40-165, gnl|hg17|chr11 (60317966-60318713) | |
| 40-165, gnl|Hg17|chr11 (60318026-60318154) | |
| 40-165, gnl|mm7|chr19 (10646074-10645303) | |
| 40-165, gnl|Mm7|chr19 (10646009-10645881) | |
| 40-165, gnl|oryCun1|scaffold_201534 (9290-10068) | |
| 40-165, gnl|panTro1|chr9 (61262868-61263612) | |
| 40-165, gnl|rheMac2|chr14 (13302341-13301594) | |
| 40-165, gnl|rn3|chr1 (213623020-213622251) | |
| 273-804, gnl|bosTau2|chr29 (28447918-28447393) | |
| 273-804, gnl|canFam2|chr18 (58502788-58502252) | |
| 273-804, gnl|echTel1|scaffold_292951 (2738-3178) | |
| 273-804, gnl|hg17|chr11 (60322299-60322835) | |
| 273-804, gnl|Hg17|chr11 (60322443-60323010) | |
| 273-804, gnl|mm7|chr19 (10644382-10643908) | |
| 273-804, gnl|oryCun1|scaffold_201534 (11332-11767) | |
| 273-804, gnl|panTro1|chr9 (61267205-61267741) | |
| 273-804, gnl|rheMac2|chr14 (13297975-13297439) | |
| 273-804, gnl|rn3|chr1 (213621269-213620791) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 40-165, gnl|bosTau2|chr29 (28450556-28450431) | |
| 40-165, gnl|canFam2|chr18 (58506104-58505319) | |
| 40-165, gnl|echTel1|scaffold_292951 (23-673) | |
| 40-165, gnl|hg17|chr11 (60317966-60318713) | |
| 40-165, gnl|Hg17|chr11 (60318026-60318154) | |
| 40-165, gnl|mm7|chr19 (10646074-10645303) | |
| 40-165, gnl|Mm7|chr19 (10646009-10645881) | |
| 40-165, gnl|oryCun1|scaffold_201534 (9290-10068) | |
| 40-165, gnl|panTro1|chr9 (61262868-61263612) | |
| 40-165, gnl|rheMac2|chr14 (13302341-13301594) | |
| 40-165, gnl|rn3|chr1 (213623020-213622251) | |
| 273-804, gnl|bosTau2|chr29 (28447918-28447393) | |
| 273-804, gnl|canFam2|chr18 (58502788-58502252) | |
| 273-804, gnl|echTel1|scaffold_292951 (2738-3178) | |
| 273-804, gnl|hg17|chr11 (60322299-60322835) | |
| 273-804, gnl|Hg17|chr11 (60322443-60323010) | |
| 273-804, gnl|mm7|chr19 (10644382-10643908) | |
| 273-804, gnl|oryCun1|scaffold_201534 (11332-11767) | |
| 273-804, gnl|panTro1|chr9 (61267205-61267741) | |
| 273-804, gnl|rheMac2|chr14 (13297975-13297439) | |
| 273-804, gnl|rn3|chr1 (213621269-213620791) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| jej (0.0989218) |