Ss1.1-rjej35b_k16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAACAAGAATACCTGGCAGATCGTACCTATGATTATGTGGAATGGCAATATCAAGACAGT AACACTTTTCAGAGTTTTGACAAGATAACCAACATGCAACTGGAGGATGCAAAGAAACAA AAGAAAAAGACAATTGATGTCAAAATTAATCATCAGAGCTACACAGTGGACTTGAACACA TGCATTGCAACAGATGCAAAGGGAAAGACCTTACTCGTTCAGCGCTATGCAAAGAGTGAA GTTGGGATCCCCCCAAACTGGAGTGATATGAAGCAGCAGAATGTCTGTGTGGTTGAACTA CAGCCTGACCATCCAGAATACAAAATGGTGGCAAGCAAGTTTAATGAGACCTGCTCAAAC TTCACCATAGAGAAGATTGAGAGGATCCAGAATCCAGATCTCTGGAGACACTACCAGACA AAGAAAAGCAACATGGATGCCAAGAATAGCCAAATAATAAATGAGAAGCTGCTCTTCCAT GGGACGGATGTTGACTCAGTGCCATTTGTCAATGGAAATGGCTTTAACCGAAGTTACGCT GGCAAGAATGCGACTTCATTTGGAAAAGGAACCTATTTTGCTGTCAATTCCAATTATTCT GCCAGTGATACATACTCTAAACCGGATGTGAATGGGAAGAAGTATATGTATTATGTGCGA GTACTTACTGGAACCTACACGCTTGGAAACAAGTCATTAATTGTGCCTCCTCTAAAGGAC CCTAAAAATCCTACTGACTTATATGACACTGTCACAGATAATATACAATGCCCAAACTTG TTTGTGGTATTTTATGACTACCAGGCTTACCCAGAGTATCTCATTACTTTTAAAAAGTAA CATTTTGGTATCCTTTGCAAAAGATATTATTCATCTATGCATATCTAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAACAAGAATACCTGGCAGATCGTACCTATGATTATGTGGAATGGCAATATCAAGACAGT AACACTTTTCAGAGTTTTGACAAGATAACCAACATGCAACTGGAGGATGCAAAGAAACAA AAGAAAAAGACAATTGATGTCAAAATTAATCATCAGAGCTACACAGTGGACTTGAACACA TGCATTGCAACAGATGCAAAGGGAAAGACCTTACTCGTTCAGCGCTATGCAAAGAGTGAA GTTGGGATCCCCCCAAACTGGAGTGATATGAAGCAGCAGAATGTCTGTGTGGTTGAACTA CAGCCTGACCATCCAGAATACAAAATGGTGGCAAGCAAGTTTAATGAGACCTGCTCAAAC TTCACCATAGAGAAGATTGAGAGGATCCAGAATCCAGATCTCTGGAGACACTACCAGACA AAGAAAAGCAACATGGATGCCAAGAATAGCCAAATAATAAATGAGAAGCTGCTCTTCCAT GGGACGGATGTTGACTCAGTGCCATTTGTCAATGGAAATGGCTTTAACCGAAGTTACGCT GGCAAGAATGCGACTTCATTTGGAAAAGGAACCTATTTTGCTGTCAATTCCAATTATTCT GCCAGTGATACATACTCTAAACCGGATGTGAATGGGAAGAAGTATATGTATTATGTGCGA GTACTTACTGGAACCTACACGCTTGGAAACAAGTCATTAATTGTGCCTCCTCTAAAGGAC CCTAAAAATCCTACTGACTTATATGACACTGTCACAGATAATATACAATGCCCAAACTTG TTTGTGGTATTTTATGACTACCAGGCTTACCCAGAGTATCTCATTACTTTTAAAAAGTAA CATTTTGGTATCCTTTGCAAAAGATATTATTCATCTATGCATATCTAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-244, gnl|bosTau2|chr1 (39248270-39248024) | |
| 1-244, gnl|canFam2|chr33 (28835683-28836098) | |
| 1-244, gnl|danRer3|chr10 (16209601-16210024) | |
| 1-244, gnl|dasNov1|scaffold_16132 (41703-42118) | |
| 1-244, gnl|echTel1|scaffold_310496 (42250-41835) | |
| 1-244, gnl|fr1|chrUn (183432116-183431635) | |
| 1-244, gnl|galGal2|chr7 (28911582-28911158) | |
| 1-244, gnl|hg17|chr3 (123919993-123920408) | |
| 1-244, gnl|Hg17|chr3 (123920255-123920498) | |
| 1-244, gnl|mm7|chr16 (35515439-35515024) | |
| 1-244, gnl|Mm7|chr16 (35515175-35514932) | |
| 1-244, gnl|monDom2|scaffold_24 (20301342-20301745) | |
| 1-244, gnl|oryCun1|scaffold_191956 (15402-15817) | |
| 1-244, gnl|panTro1|chr2 (125611767-125612182) | |
| 1-244, gnl|rheMac2|chr2 (42713870-42714285) | |
| 1-244, gnl|rn3|chr11 (66819394-66819809) | |
| 1-244, gnl|xenTro1|scaffold_1014 (179591-179176) | |
| 550-887, gnl|bosTau2|chr1 (39239544-39239207) | |
| 550-887, gnl|canFam2|chr33 (28775870-28776159) | |
| 550-887, gnl|danRer3|chr10 (15089531-15089249) | |
| 550-887, gnl|dasNov1|scaffold_72520 (3476-3765) | |
| 550-887, gnl|echTel1|scaffold_263422 (3062-3351) | |
| 550-887, gnl|fr1|chrUn (26836480-26836194) | |
| 550-887, gnl|galGal2|chr7 (28927938-28927649) | |
| 550-887, gnl|hg17|chr3 (123837341-123837630) | |
| 550-887, gnl|Hg17|chr3 (123929844-123930182) | |
| 550-887, gnl|loxAfr1|scaffold_10769 (20009-19720) | |
| 550-887, gnl|mm7|chr16 (35509157-35508868) | |
| 550-887, gnl|Mm7|chr16 (35509149-35508828) | |
| 550-887, gnl|monDom2|scaffold_24 (20313958-20314247) | |
| 550-887, gnl|panTro1|chr2 (125526969-125527258) | |
| 550-887, gnl|rheMac2|chr2 (42626890-42627179) | |
| 550-887, gnl|rn3|chr11 (66824547-66824836) | |
| 550-887, gnl|tetNig1|chr2 (16123354-16123644) | |
| 550-887, gnl|xenTro1|scaffold_1014 (198145-197856) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-244, gnl|bosTau2|chr1 (39248270-39248024) | |
| 1-244, gnl|canFam2|chr33 (28835683-28836098) | |
| 1-244, gnl|danRer3|chr10 (16209601-16210024) | |
| 1-244, gnl|dasNov1|scaffold_16132 (41703-42118) | |
| 1-244, gnl|echTel1|scaffold_310496 (42250-41835) | |
| 1-244, gnl|fr1|chrUn (183432116-183431635) | |
| 1-244, gnl|galGal2|chr7 (28911582-28911158) | |
| 1-244, gnl|hg17|chr3 (123919993-123920408) | |
| 1-244, gnl|Hg17|chr3 (123920255-123920498) | |
| 1-244, gnl|mm7|chr16 (35515439-35515024) | |
| 1-244, gnl|Mm7|chr16 (35515175-35514932) | |
| 1-244, gnl|monDom2|scaffold_24 (20301342-20301745) | |
| 1-244, gnl|oryCun1|scaffold_191956 (15402-15817) | |
| 1-244, gnl|panTro1|chr2 (125611767-125612182) | |
| 1-244, gnl|rheMac2|chr2 (42713870-42714285) | |
| 1-244, gnl|rn3|chr11 (66819394-66819809) | |
| 1-244, gnl|xenTro1|scaffold_1014 (179591-179176) | |
| 550-887, gnl|bosTau2|chr1 (39239544-39239207) | |
| 550-887, gnl|canFam2|chr33 (28775870-28776159) | |
| 550-887, gnl|danRer3|chr10 (15089531-15089249) | |
| 550-887, gnl|dasNov1|scaffold_72520 (3476-3765) | |
| 550-887, gnl|echTel1|scaffold_263422 (3062-3351) | |
| 550-887, gnl|fr1|chrUn (26836480-26836194) | |
| 550-887, gnl|galGal2|chr7 (28927938-28927649) | |
| 550-887, gnl|hg17|chr3 (123837341-123837630) | |
| 550-887, gnl|Hg17|chr3 (123929844-123930182) | |
| 550-887, gnl|loxAfr1|scaffold_10769 (20009-19720) | |
| 550-887, gnl|mm7|chr16 (35509157-35508868) | |
| 550-887, gnl|Mm7|chr16 (35509149-35508828) | |
| 550-887, gnl|monDom2|scaffold_24 (20313958-20314247) | |
| 550-887, gnl|panTro1|chr2 (125526969-125527258) | |
| 550-887, gnl|rheMac2|chr2 (42626890-42627179) | |
| 550-887, gnl|rn3|chr11 (66824547-66824836) | |
| 550-887, gnl|tetNig1|chr2 (16123354-16123644) | |
| 550-887, gnl|xenTro1|scaffold_1014 (198145-197856) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| sin (0.69979) | |
| cbl (0.229595) | |
| duo (0.172801) | |
| isp (0.150376) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| tra (0.123092) | |
| clu (0.119646) | |
| jej (0.0989218) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.69979) | |
| cbl (0.229595) | |
| duo (0.172801) | |
| isp (0.150376) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| tra (0.123092) | |
| clu (0.119646) | |
| jej (0.0989218) |