Ss1.1-rjej35b_o16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTGATGGACCTGGAGGAAACCTTGCTCATGCTTTTCAGCCAGGCCCAGGTATTGGAGG GGATGCTCATTTTGATGAAGATGAAAGGTGGACCAAAAATTTCAGAGATTATAACTTGTA TCGTGTGGCTGCTCATGAACTGGGCCATTCCCTTGGCCTTTCTCATTCCACTGACATTGG GGCTTTGATGTACCCCAACTACATCTACACTGGTGATGTTCAGCTGTCCCAAGATGACAT TGATGGCATCCAGGCCATCTATGGACCTTCCGAAAACCCCGTTCAGCCAAGTGGCCCACA AACCCCACAAGTGTGTGATAGTAAGCTAACTTTTGATGCTATAACTACACTTCGGGGAGA ACTAATGTTCTTTAAAGACAGGTTCTACATGCGCACAAATTCCTTCTACCCTGAAGTGGA GCTCAATTTCATTTCTGTGTTCTGGCCACAAGTGCCAAATGGACTTCAAGCTGCTTATGA GATTGCCGATAGAGATGAAGTCCGGTTTTTCAAAGGTAACAAGTACTGGGCTGTTAGGGG GCAGGATGTGCTATACGGATACCCCAAGGACATCCACAGATCCTTTGGCTTCCCTAGTAC TGTGAAGAATATCGATGCTGCTGTTTTTGAGGAAGATACTGGGAAAACATACTTCTTTGT TGCTCACGAATGCTGGAGGTATGATGAATATAAACAATCCATGGATACAGGTTATCCCAA AATGATAGCAGAAGAATTTCCTGGGATTGGCAACAAAGTTGATGCTGTTTTCCAGAAAGA CGGATTTCTATATTTCTTCCATGGAACAAGGCAGTACCAATTTGATTTCAAAACGAAGAG AATTTTGACTCTCCAAAAAGCTAATAGCTGGTTCAACTGCAGAAAAAATTGACCAACTCT TACAAAGTTAAAGAGAAAAACAGATTTCATGAGTTGAAGAAAAGTGTTTTCCTAAAGAGC CATGTATTAAATACAATACAGTTATTAAGTATAATCTTATTTATACCTCGTTCTGCATGG GTTTTTTTATGACTTACAATGTAATAATTTATATATGGCTATAATTTAAGTTCCACAAAT GAGTGCTGAGTTAGGTCAAGTTCATGGCTTACAAATACAGTTTTGCAATGAAAGAAGCTC TTTTCCAAAATATAAGACTCTGACACTGATAGTGGAGAGCAGTCTCAGTGATGAACATCT CTTCCCAAGAAAGAAAGAGACAAGAGATATGTCTTCACCAGAAGAAAAACAGTTCAAGAA TGGATGAGCCGTCGTTATTATTATCATCTTCATATCTAAGGGGCAACTTTTGTGACAAAG TCTTATATTTGAAATAAAGCCATCCTTGTCTCTAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTGATGGACCTGGAGGAAACCTTGCTCATGCTTTTCAGCCAGGCCCAGGTATTGGAGG GGATGCTCATTTTGATGAAGATGAAAGGTGGACCAAAAATTTCAGAGATTATAACTTGTA TCGTGTGGCTGCTCATGAACTGGGCCATTCCCTTGGCCTTTCTCATTCCACTGACATTGG GGCTTTGATGTACCCCAACTACATCTACACTGGTGATGTTCAGCTGTCCCAAGATGACAT TGATGGCATCCAGGCCATCTATGGACCTTCCGAAAACCCCGTTCAGCCAAGTGGCCCACA AACCCCACAAGTGTGTGATAGTAAGCTAACTTTTGATGCTATAACTACACTTCGGGGAGA ACTAATGTTCTTTAAAGACAGGTTCTACATGCGCACAAATTCCTTCTACCCTGAAGTGGA GCTCAATTTCATTTCTGTGTTCTGGCCACAAGTGCCAAATGGACTTCAAGCTGCTTATGA GATTGCCGATAGAGATGAAGTCCGGTTTTTCAAAGGTAACAAGTACTGGGCTGTTAGGGG GCAGGATGTGCTATACGGATACCCCAAGGACATCCACAGATCCTTTGGCTTCCCTAGTAC TGTGAAGAATATCGATGCTGCTGTTTTTGAGGAAGATACTGGGAAAACATACTTCTTTGT TGCTCACGAATGCTGGAGGTATGATGAATATAAACAATCCATGGATACAGGTTATCCCAA AATGATAGCAGAAGAATTTCCTGGGATTGGCAACAAAGTTGATGCTGTTTTCCAGAAAGA CGGATTTCTATATTTCTTCCATGGAACAAGGCAGTACCAATTTGATTTCAAAACGAAGAG AATTTTGACTCTCCAAAAAGCTAATAGCTGGTTCAACTGCAGAAAAAATTGACCAACTCT TACAAAGTTAAAGAGAAAAACAGATTTCATGAGTTGAAGAAAAGTGTTTTCCTAAAGAGC CATGTATTAAATACAATACAGTTATTAAGTATAATCTTATTTATACCTCGTTCTGCATGG GTTTTTTTATGACTTACAATGTAATAATTTATATATGGCTATAATTTAAGTTCCACAAAT GAGTGCTGAGTTAGGTCAAGTTCATGGCTTACAAATACAGTTTTGCAATGAAAGAAGCTC TTTTCCAAAATATAAGACTCTGACACTGATAGTGGAGAGCAGTCTCAGTGATGAACATCT CTTCCCAAGAAAGAAAGAGACAAGAGATATGTCTTCACCAGAAGAAAAACAGTTCAAGAA TGGATGAGCCGTCGTTATTATTATCATCTTCATATCTAAGGGGCAACTTTTGTGACAAAG TCTTATATTTGAAATAAAGCCATCCTTGTCTCTAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-103, gnl|bosTau2|chr15 (1093737-1093839) | |
| 1-103, gnl|canFam2|chr5 (31988615-31988476) | |
| 1-103, gnl|danRer3|chr15 (32409457-32409304) | |
| 1-103, gnl|dasNov1|scaffold_140724 (1477-1338) | |
| 1-103, gnl|echTel1|scaffold_319990 (45905-46045) | |
| 1-103, gnl|fr1|chrUn (269954395-269954257) | |
| 1-103, gnl|galGal2|chr1 (174405934-174405795) | |
| 1-103, gnl|hg17|chr11 (102172602-102172741) | |
| 1-103, gnl|Hg17|chr11 (102172711-102172609) | |
| 1-103, gnl|loxAfr1|scaffold_35205 (8405-8544) | |
| 1-103, gnl|mm7|chr9 (7463804-7463665) | |
| 1-103, gnl|Mm7|chr9 (7463693-7463795) | |
| 1-103, gnl|monDom2|scaffold_65 (8043520-8043659) | |
| 1-103, gnl|oryCun1|scaffold_172882 (43426-43565) | |
| 1-103, gnl|panTro1|chr9 (104154957-104155096) | |
| 1-103, gnl|rheMac2|chr14 (101415237-101415376) | |
| 1-103, gnl|rn3|chr8 (4335329-4335190) | |
| 1-103, gnl|tetNig1|chrUn_random (50663346-50663235) | |
| 1-103, gnl|xenTro1|scaffold_601 (596712-596851) | |
| 106-264, gnl|bosTau2|chr15 (1094845-1095003) | |
| 106-264, gnl|canFam2|chr5 (31990020-31989850) | |
| 106-264, gnl|danRer3|chrNA (191085722-191085546) | |
| 106-264, gnl|dasNov1|scaffold_35063 (3873-3703) | |
| 106-264, gnl|echTel1|scaffold_319990 (44880-45050) | |
| 106-264, gnl|fr1|chrUn (269954640-269954470) | |
| 106-264, gnl|galGal2|chr1 (174378368-174378193) | |
| 106-264, gnl|hg17|chr11 (102171386-102171556) | |
| 106-264, gnl|Hg17|chr11 (102171550-102171392) | |
| 106-264, gnl|loxAfr1|scaffold_35205 (7551-7721) | |
| 106-264, gnl|mm7|chr9 (7465227-7465054) | |
| 106-264, gnl|Mm7|chr9 (7465058-7465219) | |
| 106-264, gnl|monDom2|scaffold_65 (8041822-8041997) | |
| 106-264, gnl|oryCun1|scaffold_179522 (46610-46778) | |
| 106-264, gnl|panTro1|chr9 (104153741-104153911) | |
| 106-264, gnl|rheMac2|chr14 (101414008-101414178) | |
| 106-264, gnl|rn3|chr8 (4336797-4336624) | |
| 106-264, gnl|tetNig1|chrUn_random (50663617-50663443) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-103, gnl|bosTau2|chr15 (1093737-1093839) | |
| 1-103, gnl|canFam2|chr5 (31988615-31988476) | |
| 1-103, gnl|danRer3|chr15 (32409457-32409304) | |
| 1-103, gnl|dasNov1|scaffold_140724 (1477-1338) | |
| 1-103, gnl|echTel1|scaffold_319990 (45905-46045) | |
| 1-103, gnl|fr1|chrUn (269954395-269954257) | |
| 1-103, gnl|galGal2|chr1 (174405934-174405795) | |
| 1-103, gnl|hg17|chr11 (102172602-102172741) | |
| 1-103, gnl|Hg17|chr11 (102172711-102172609) | |
| 1-103, gnl|loxAfr1|scaffold_35205 (8405-8544) | |
| 1-103, gnl|mm7|chr9 (7463804-7463665) | |
| 1-103, gnl|Mm7|chr9 (7463693-7463795) | |
| 1-103, gnl|monDom2|scaffold_65 (8043520-8043659) | |
| 1-103, gnl|oryCun1|scaffold_172882 (43426-43565) | |
| 1-103, gnl|panTro1|chr9 (104154957-104155096) | |
| 1-103, gnl|rheMac2|chr14 (101415237-101415376) | |
| 1-103, gnl|rn3|chr8 (4335329-4335190) | |
| 1-103, gnl|tetNig1|chrUn_random (50663346-50663235) | |
| 1-103, gnl|xenTro1|scaffold_601 (596712-596851) | |
| 106-264, gnl|bosTau2|chr15 (1094845-1095003) | |
| 106-264, gnl|canFam2|chr5 (31990020-31989850) | |
| 106-264, gnl|danRer3|chrNA (191085722-191085546) | |
| 106-264, gnl|dasNov1|scaffold_35063 (3873-3703) | |
| 106-264, gnl|echTel1|scaffold_319990 (44880-45050) | |
| 106-264, gnl|fr1|chrUn (269954640-269954470) | |
| 106-264, gnl|galGal2|chr1 (174378368-174378193) | |
| 106-264, gnl|hg17|chr11 (102171386-102171556) | |
| 106-264, gnl|Hg17|chr11 (102171550-102171392) | |
| 106-264, gnl|loxAfr1|scaffold_35205 (7551-7721) | |
| 106-264, gnl|mm7|chr9 (7465227-7465054) | |
| 106-264, gnl|Mm7|chr9 (7465058-7465219) | |
| 106-264, gnl|monDom2|scaffold_65 (8041822-8041997) | |
| 106-264, gnl|oryCun1|scaffold_179522 (46610-46778) | |
| 106-264, gnl|panTro1|chr9 (104153741-104153911) | |
| 106-264, gnl|rheMac2|chr14 (101414008-101414178) | |
| 106-264, gnl|rn3|chr8 (4336797-4336624) | |
| 106-264, gnl|tetNig1|chrUn_random (50663617-50663443) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| sin (1.04969) | |
| lin (0.436808) | |
| jej (0.395687) | |
| duo (0.345602) | |
| nje (0.33184) | |
| rec (0.17307) | |
| csk (0.140746) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| bla (0.124347) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (1.04969) | |
| lin (0.436808) | |
| jej (0.395687) | |
| duo (0.345602) | |
| nje (0.33184) | |
| rec (0.17307) | |
| csk (0.140746) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| bla (0.124347) |