Non-Coding RNA Search

Ss1.1-rjej35b_o17.5

Sequence:


               
               AAAAAAAAAAAAAAAAAAAAAAACAGGTAAAAGCTAATTAGGATTTAAGTTGTTCTACAT
TCTCTAAGATGTAAATTTATTGGTATTCTCGAATAATTTGCAGCATTTTAAAAACCATGT
GAATAAATATTGTTCCCCCACTGCTTTATAAGTAGCCTCCCCTTAAAAAAAAAAAAAAAG
TTATGTCACATATGCATCAATAGACTATTTTGGGTTTTTCCCACATTTGGTAAACTGAAA
ACATTTATTGTGTGGGGGCTTTAAAATCTTGCACTGGTTCTAAATATTTTCCTTAGTGAC
ATTTACTATTATAAAATAATATATATTCAATCAGAAAGTTTAGAAATAAAAGCAAATGCA
AAAGAAATATTTGCAAAAACCCACAATCCAGAGATAACCATTATTCTGAATTTAATAGAT
ATCCTCCCAGTTCCTTCTCTGGATGTGGATTTGTGTATTTCCCCATACCTACCACTCTGA
ACAATATAATAGGAAACAAATGATATACTAAGGCAAAGAACTGTATTCTATTTTTCTACA
TTGTCAGTGATTCCAGAGCTGGGTAAGCATCAGGATCATCTGAGAAACTTAAAAATTTTT
TGCATGATTTCTCTCCACGGTTATCCTACTAGATCAGAATCTCTGAAAGCAGAACCAGAG
ATCCTGAAAACTCCCAAGTGATTCTGAAGCATCGAGAACACAAACCAGTCTTTGAGAACA
GATGGGCTAACAGATGCCAGAAGTGTCACTTTCAAGTGTTGCCACCCTTTTACACATAAT
CATGAATGCTGATAGTTTTCCAGGGCCCCCAAAGTTTTCTTTCACTCACATACTCATCTA
AGGTACTATTTTGTGTATTTCAAGCAATTTGAAGTGGGTGTGTATGATGGGGCTCGGAGG
GTGGTCAATATTTTAAGCATTTAACTCTACAAACTTTTGTTTTGACTAATTATTTTTCAT
ACGAATGAAGATAATAGCTAATATTTATACAGTTCTTACCAAGTCCCAGGTTCCCTTCTA
ACTTGTGAATAAACATGGCAGATGCACTACAATGTGTGAAGAAAAATGTTAGAATACATG
ATAAAAATGAATAGATCAGAGAATATGTAATCTTTGCAAAAACAAATTAAATTCACTGTT
CATTTTATAACTTCATTTAAAACTTCACATAGAAAATAGTAATTACTTAGATTGTTCACA
TGCTTTTTAAAAATAAAGATTCAATGTGGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAAAAAAAAAAACAGGTAAAAGCTAATTAGGATTTAAGTTGTTCTACAT
TCTCTAAGATGTAAATTTATTGGTATTCTCGAATAATTTGCAGCATTTTAAAAACCATGT
GAATAAATATTGTTCCCCCACTGCTTTATAAGTAGCCTCCCCTTAAAAAAAAAAAAAAAG
TTATGTCACATATGCATCAATAGACTATTTTGGGTTTTTCCCACATTTGGTAAACTGAAA
ACATTTATTGTGTGGGGGCTTTAAAATCTTGCACTGGTTCTAAATATTTTCCTTAGTGAC
ATTTACTATTATAAAATAATATATATTCAATCAGAAAGTTTAGAAATAAAAGCAAATGCA
AAAGAAATATTTGCAAAAACCCACAATCCAGAGATAACCATTATTCTGAATTTAATAGAT
ATCCTCCCAGTTCCTTCTCTGGATGTGGATTTGTGTATTTCCCCATACCTACCACTCTGA
ACAATATAATAGGAAACAAATGATATACTAAGGCAAAGAACTGTATTCTATTTTTCTACA
TTGTCAGTGATTCCAGAGCTGGGTAAGCATCAGGATCATCTGAGAAACTTAAAAATTTTT
TGCATGATTTCTCTCCACGGTTATCCTACTAGATCAGAATCTCTGAAAGCAGAACCAGAG
ATCCTGAAAACTCCCAAGTGATTCTGAAGCATCGAGAACACAAACCAGTCTTTGAGAACA
GATGGGCTAACAGATGCCAGAAGTGTCACTTTCAAGTGTTGCCACCCTTTTACACATAAT
CATGAATGCTGATAGTTTTCCAGGGCCCCCAAAGTTTTCTTTCACTCACATACTCATCTA
AGGTACTATTTTGTGTATTTCAAGCAATTTGAAGTGGGTGTGTATGATGGGGCTCGGAGG
GTGGTCAATATTTTAAGCATTTAACTCTACAAACTTTTGTTTTGACTAATTATTTTTCAT
ACGAATGAAGATAATAGCTAATATTTATACAGTTCTTACCAAGTCCCAGGTTCCCTTCTA
ACTTGTGAATAAACATGGCAGATGCACTACAATGTGTGAAGAAAAATGTTAGAATACATG
ATAAAAATGAATAGATCAGAGAATATGTAATCTTTGCAAAAACAAATTAAATTCACTGTT
CATTTTATAACTTCATTTAAAACTTCACATAGAAAATAGTAATTACTTAGATTGTTCACA
TGCTTTTTAAAAATAAAGATTCAATGTGGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               348-463, - strand, RNAz p=0.981452
               

               
               574-732, - strand, RNAz p=0.856276

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               348-463, - strand, RNAz p=0.981452
               

               
               574-732, - strand, RNAz p=0.856276

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               15-1234, gnl|bosTau2|chr6 (3088833-3087621)
               

               
               15-1234, gnl|Hg17|chr4 (120597656-120595912)
               


               
               747-1185, gnl|bosTau2|chr24 (5984315-5984747)
               

               
               747-1185, gnl|Hg17|chr4 (120596616-120595959)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-1234, gnl|bosTau2|chr6 (3088833-3087621)
               

               
               15-1234, gnl|Hg17|chr4 (120597656-120595912)
               


               
               747-1185, gnl|bosTau2|chr24 (5984315-5984747)
               

               
               747-1185, gnl|Hg17|chr4 (120596616-120595959)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               jej (4.74824)
               

               
               sin (2.97411)
               

               
               nje (1.32736)
               

               
               duo (0.691204)
               

               
               col (0.195008)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (4.74824)
               

               
               sin (2.97411)
               

               
               nje (1.32736)
               

               
               duo (0.691204)
               

               
               col (0.195008)

	348-463, - strand, RNAz p=0.981452
	574-732, - strand, RNAz p=0.856276

	15-1234, gnl\|bosTau2\|chr6 (3088833-3087621)
	15-1234, gnl\|Hg17\|chr4 (120597656-120595912)

	747-1185, gnl\|bosTau2\|chr24 (5984315-5984747)
	747-1185, gnl\|Hg17\|chr4 (120596616-120595959)

	jej (4.74824)
	sin (2.97411)
	nje (1.32736)
	duo (0.691204)
	col (0.195008)