Non-Coding RNA Search

Ss1.1-rjej36b_b3.5

Sequence:


               
               GTTGTTTCCCCGCGCGGCCGCCCGAACCGGCGAAGTCATGGGCGCCGCGACACCGCCGCT
GCTGCCCGGCCCCCAGGAAGAGAAGTTAAAGTTCTAGAGAAGCCTCATGGACAATCTCCA
CAACAGATGGTAACAAAAAGTAATCCAGATGGGGTGCAGGTGCTGCAAAATGATACAAAG
CTATCTCTTCGACCCAGTTCAAGTGCCCTCCCCTGGTTATGTCAACGAAGTAAACAGCTG
CAAGTTAGATGAAGACGACACTGTTAAATTAAAAGGCAGGCAGAGCGGCGAAGTGCTAGT
GCCTAAAAGTGACCTTCAGAGCAAGGACTCAGTGAGGACCGCGAGCACAAGCGGGCAGGA
TGCTCCGCCGGAGCCCTGCCGCCCACCCCAGGGACCTCTCCCTTACGGGGACCCAGCGGG
GGGACCCTGTGCAGAGAAGCCTGGCAGTGCAGTCAATGGCCTCGGCCCTGCTACTGCCCT
GCAGCTCCCTGGGGATCCCAAGCTCCCCCAGGGAGACGGGGGCTCCCAGGCCAGTAGGGC
GAACAGGGTTCCCCAGAGCCAGCCCTTCCTTGAAGGAGACAACGCCAGGGCACTGGACTG
CGTGCTGCTGGCCTTGGAAGAGACCCAGGTCATGGGAGATGGGGACTCCAGAGCGCCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGTTTCCCCGCGCGGCCGCCCGAACCGGCGAAGTCATGGGCGCCGCGACACCGCCGCT
GCTGCCCGGCCCCCAGGAAGAGAAGTTAAAGTTCTAGAGAAGCCTCATGGACAATCTCCA
CAACAGATGGTAACAAAAAGTAATCCAGATGGGGTGCAGGTGCTGCAAAATGATACAAAG
CTATCTCTTCGACCCAGTTCAAGTGCCCTCCCCTGGTTATGTCAACGAAGTAAACAGCTG
CAAGTTAGATGAAGACGACACTGTTAAATTAAAAGGCAGGCAGAGCGGCGAAGTGCTAGT
GCCTAAAAGTGACCTTCAGAGCAAGGACTCAGTGAGGACCGCGAGCACAAGCGGGCAGGA
TGCTCCGCCGGAGCCCTGCCGCCCACCCCAGGGACCTCTCCCTTACGGGGACCCAGCGGG
GGGACCCTGTGCAGAGAAGCCTGGCAGTGCAGTCAATGGCCTCGGCCCTGCTACTGCCCT
GCAGCTCCCTGGGGATCCCAAGCTCCCCCAGGGAGACGGGGGCTCCCAGGCCAGTAGGGC
GAACAGGGTTCCCCAGAGCCAGCCCTTCCTTGAAGGAGACAACGCCAGGGCACTGGACTG
CGTGCTGCTGGCCTTGGAAGAGACCCAGGTCATGGGAGATGGGGACTCCAGAGCGCCTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|23138825|gb|AAH37906.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|23138825|gb|AAH37906.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               378-562, - strand, RNAz p=0.934735

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               378-562, - strand, RNAz p=0.934735

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               179-660, gnl|bosTau2|chr6 (28799626-28799145)
               

               
               179-660, gnl|Hg17|chr4 (37414274-37414743)
               

               
               179-660, gnl|Mm7|chr5 (63251851-63252317)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               179-660, gnl|bosTau2|chr6 (28799626-28799145)
               

               
               179-660, gnl|Hg17|chr4 (37414274-37414743)
               

               
               179-660, gnl|Mm7|chr5 (63251851-63252317)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	179-660, gnl\|bosTau2\|chr6 (28799626-28799145)
	179-660, gnl\|Hg17\|chr4 (37414274-37414743)
	179-660, gnl\|Mm7\|chr5 (63251851-63252317)