Non-Coding RNA Search

Ss1.1-rjej36b_d22.5

Sequence:


               
               GGGATGAGCCTCTAGCTCGGAGCATACCAGAAGTCGGCTGGAGACAGAACTGGCTGGGCT
CGTGAATGGGGATTTAGCCATTGAAAAGATGGCTTCCTCTGCCAGTCCTATGGGCCCTAT
TGACAGCCTGGAGCTCTTGGATCTCCTGTTTGACCGGCAGGACGGCATCCTGAGACACGT
AGAACTGGGCGAGGACTGGGGCCGCATCGAGGACCAGGTTTTGCCTGGCCCGGACTCTGA
TGATTTCCTCAACTCCATCCTGGGTTCTGGAGATTCAGCGCCCAGCTCCCCAACCTGGTC
TCCTGCGGCCAGTGACAGTGGCATCTCAGAAGATCTGCCCTCCGACCCCCAGGACACCCC
TCCACGTAGTGGTGTGGCTGCCACCCCGTCCAGCTACCATACCTCAGAGTCTGGCAAGGG
ACCCTGTCCCTCCTACCCTCCTGGCCCTCCCTGCCCTGCCAGGCACCTTGGGCCAGTGGC
CTCTGTGGCCATAGACCTGGAGATGTGGAGCCCAGGCCTCTACGCTGAGGAGCAGGCCGA
ACTGGCTGACTCACCCCCTCGCTGCAACCTCACGGTGAAAGATCTCCTCCTCTCGGGCAG
CAGTGGGGACCTGCAACAGCATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGATGAGCCTCTAGCTCGGAGCATACCAGAAGTCGGCTGGAGACAGAACTGGCTGGGCT
CGTGAATGGGGATTTAGCCATTGAAAAGATGGCTTCCTCTGCCAGTCCTATGGGCCCTAT
TGACAGCCTGGAGCTCTTGGATCTCCTGTTTGACCGGCAGGACGGCATCCTGAGACACGT
AGAACTGGGCGAGGACTGGGGCCGCATCGAGGACCAGGTTTTGCCTGGCCCGGACTCTGA
TGATTTCCTCAACTCCATCCTGGGTTCTGGAGATTCAGCGCCCAGCTCCCCAACCTGGTC
TCCTGCGGCCAGTGACAGTGGCATCTCAGAAGATCTGCCCTCCGACCCCCAGGACACCCC
TCCACGTAGTGGTGTGGCTGCCACCCCGTCCAGCTACCATACCTCAGAGTCTGGCAAGGG
ACCCTGTCCCTCCTACCCTCCTGGCCCTCCCTGCCCTGCCAGGCACCTTGGGCCAGTGGC
CTCTGTGGCCATAGACCTGGAGATGTGGAGCCCAGGCCTCTACGCTGAGGAGCAGGCCGA
ACTGGCTGACTCACCCCCTCGCTGCAACCTCACGGTGAAAGATCTCCTCCTCTCGGGCAG
CAGTGGGGACCTGCAACAGCATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61815495|ref|XP_584044.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61815495|ref|XP_584044.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               254-481, - strand, RNAz p=0.978588

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               254-481, - strand, RNAz p=0.978588

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               215-481, gnl|bosTau2|chr7 (15450400-15450140)
               

               
               215-481, gnl|Hg17|chr19 (4107992-4108258)
               

               
               215-481, gnl|Mm7|chr10 (80883432-80883160)
               


               
               500-613, gnl|bosTau2|chr7 (15449261-15449148)
               

               
               500-613, gnl|canFam2|chr20 (58379991-58379823)
               

               
               500-613, gnl|echTel1|scaffold_295547 (1917-1728)
               

               
               500-613, gnl|hg17|chr19 (4110617-4110792)
               

               
               500-613, gnl|Hg17|chr19 (4110660-4110779)
               

               
               500-613, gnl|loxAfr1|scaffold_146355 (3499-3671)
               

               
               500-613, gnl|mm7|chr10 (80882220-80882063)
               

               
               500-613, gnl|Mm7|chr10 (80882181-80882074)
               

               
               500-613, gnl|monDom2|scaffold_85 (932006-932182)
               

               
               500-613, gnl|panTro1|chr20 (4389894-4390069)
               

               
               500-613, gnl|rn3|chr7 (10109082-10109240)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               215-481, gnl|bosTau2|chr7 (15450400-15450140)
               

               
               215-481, gnl|Hg17|chr19 (4107992-4108258)
               

               
               215-481, gnl|Mm7|chr10 (80883432-80883160)
               


               
               500-613, gnl|bosTau2|chr7 (15449261-15449148)
               

               
               500-613, gnl|canFam2|chr20 (58379991-58379823)
               

               
               500-613, gnl|echTel1|scaffold_295547 (1917-1728)
               

               
               500-613, gnl|hg17|chr19 (4110617-4110792)
               

               
               500-613, gnl|Hg17|chr19 (4110660-4110779)
               

               
               500-613, gnl|loxAfr1|scaffold_146355 (3499-3671)
               

               
               500-613, gnl|mm7|chr10 (80882220-80882063)
               

               
               500-613, gnl|Mm7|chr10 (80882181-80882074)
               

               
               500-613, gnl|monDom2|scaffold_85 (932006-932182)
               

               
               500-613, gnl|panTro1|chr20 (4389894-4390069)
               

               
               500-613, gnl|rn3|chr7 (10109082-10109240)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               jej (0.197844)
               

               
               nep (0.183925)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               eje (0.0988338)

	215-481, gnl\|bosTau2\|chr7 (15450400-15450140)
	215-481, gnl\|Hg17\|chr19 (4107992-4108258)
	215-481, gnl\|Mm7\|chr10 (80883432-80883160)

	500-613, gnl\|bosTau2\|chr7 (15449261-15449148)
	500-613, gnl\|canFam2\|chr20 (58379991-58379823)
	500-613, gnl\|echTel1\|scaffold_295547 (1917-1728)
	500-613, gnl\|hg17\|chr19 (4110617-4110792)
	500-613, gnl\|Hg17\|chr19 (4110660-4110779)
	500-613, gnl\|loxAfr1\|scaffold_146355 (3499-3671)
	500-613, gnl\|mm7\|chr10 (80882220-80882063)
	500-613, gnl\|Mm7\|chr10 (80882181-80882074)
	500-613, gnl\|monDom2\|scaffold_85 (932006-932182)
	500-613, gnl\|panTro1\|chr20 (4389894-4390069)
	500-613, gnl\|rn3\|chr7 (10109082-10109240)