Non-Coding RNA Search

Ss1.1-rjej36b_e12.5

Sequence:


               
               TGAATATATGAGATATCCTGCCATCTAAAAAAGCAGCCTAACTTTTGTATTGATGCATAT
TAATTATTTGAACAGTTTCTGTCTTGCTGGCGCATTTTCAAAAATGCTGAACTGATCTCT
CTTTGAAATAAACACAACTCTTCCCATCCTTTGGTGATGTCAAATGCCTGTGAAGGGAAT
GGACAAGAGTAGCCTAAAGAAAAAGTGTTGTAGGAAATGTTAATTCCTCTTCGTTAAAAT
TTTTAATTCTCATGGCCTGATTTCTTTCAGACTTTTTAGTAATGAGCATCTGACCATTGC
AATAGATTTTTTAATATATACAACCATCTTATTTTGTCACATGCAGGAATATTGGTATAA
GAGGTCATCTATTTTAAATACTTTTACCAATGTCTTTATTTGGAAAACAATTGAAAGCTT
ATAATTAAAGTTGTCGACTCCATCTCAAAATATTTTTCAGAATATTTAAGCGAACTACAA
ATATATGAAACAATTATTTCAGAATGATTTATAAATATTTCCTTCTATGTTAACATGATA
TATTACTAAAAAAAATAAAACTTCCTTAATTTTCTTATTGCTTTATTATATTAATAGGAT
TCTGGAACAGAAAACACTGAACATTTGTAGTATTTAAGAAAATGGAACCTGGAAACAGTG
GATAATTGAGTATTAGACTACGTCAAATCACTTTTTTTTTTTTTGCCTGTGGCACCGAGG
AATGAAGAGCCAGTTAACTGGGAGAGAAGCAACTCTCTGATAGAAAAACATGACAAAACT
TTATATGAAGATTTATTATTGGAATATTATAGAGCCAAAGCCTTATTTTTAATGTGGAAA
AGCATAGGAAGTATTTCATTTACTTGAGAGAACTTCAATGAAAGCTCAATGGTATGGTGG
AAAGATCCTGAAGTAGAACTTAGAACTGGCTTCCAAAAATATGAAATTTGAGAGCTTGGA
ATGAGATTTAGATCAGTTTTTTACTTTACAAATGAGAAAGCTGAGGCCTAGCTTGTTTCA
ATGGCATACTGAAGGTTTGATACAACCCCTGGACTAAGTACCCAACTCTTAAGATTTTAG
GATTATTTTTGCTATATTACTATTCAACATGACTAGTTTTAATGACAGTATATTCAAGAG
TTATGTACTGTTTTCATCTTAAATACATTTTTATTAGAATTTACTGGTGCCATTTTTATC
CCCAGTGCTAGGGTTGTAGAAAGGAAAGTGCCTCATTCCTTTGGAAAACTCTACATGGTT
GGGAAAAGAATCGAGTGGGTTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAATATATGAGATATCCTGCCATCTAAAAAAGCAGCCTAACTTTTGTATTGATGCATAT
TAATTATTTGAACAGTTTCTGTCTTGCTGGCGCATTTTCAAAAATGCTGAACTGATCTCT
CTTTGAAATAAACACAACTCTTCCCATCCTTTGGTGATGTCAAATGCCTGTGAAGGGAAT
GGACAAGAGTAGCCTAAAGAAAAAGTGTTGTAGGAAATGTTAATTCCTCTTCGTTAAAAT
TTTTAATTCTCATGGCCTGATTTCTTTCAGACTTTTTAGTAATGAGCATCTGACCATTGC
AATAGATTTTTTAATATATACAACCATCTTATTTTGTCACATGCAGGAATATTGGTATAA
GAGGTCATCTATTTTAAATACTTTTACCAATGTCTTTATTTGGAAAACAATTGAAAGCTT
ATAATTAAAGTTGTCGACTCCATCTCAAAATATTTTTCAGAATATTTAAGCGAACTACAA
ATATATGAAACAATTATTTCAGAATGATTTATAAATATTTCCTTCTATGTTAACATGATA
TATTACTAAAAAAAATAAAACTTCCTTAATTTTCTTATTGCTTTATTATATTAATAGGAT
TCTGGAACAGAAAACACTGAACATTTGTAGTATTTAAGAAAATGGAACCTGGAAACAGTG
GATAATTGAGTATTAGACTACGTCAAATCACTTTTTTTTTTTTTGCCTGTGGCACCGAGG
AATGAAGAGCCAGTTAACTGGGAGAGAAGCAACTCTCTGATAGAAAAACATGACAAAACT
TTATATGAAGATTTATTATTGGAATATTATAGAGCCAAAGCCTTATTTTTAATGTGGAAA
AGCATAGGAAGTATTTCATTTACTTGAGAGAACTTCAATGAAAGCTCAATGGTATGGTGG
AAAGATCCTGAAGTAGAACTTAGAACTGGCTTCCAAAAATATGAAATTTGAGAGCTTGGA
ATGAGATTTAGATCAGTTTTTTACTTTACAAATGAGAAAGCTGAGGCCTAGCTTGTTTCA
ATGGCATACTGAAGGTTTGATACAACCCCTGGACTAAGTACCCAACTCTTAAGATTTTAG
GATTATTTTTGCTATATTACTATTCAACATGACTAGTTTTAATGACAGTATATTCAAGAG
TTATGTACTGTTTTCATCTTAAATACATTTTTATTAGAATTTACTGGTGCCATTTTTATC
CCCAGTGCTAGGGTTGTAGAAAGGAAAGTGCCTCATTCCTTTGGAAAACTCTACATGGTT
GGGAAAAGAATCGAGTGGGTTTCA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               34-549, gnl|bosTau2|chr14 (36916492-36917020)
               


               
               568-693, gnl|bosTau2|chr11 (66922288-66922415)
               

               
               568-693, gnl|Hg17|chr8 (92157075-92157192)
               

               
               568-693, gnl|Mm7|chr4 (14748251-14748131)
               


               
               739-1250, gnl|bosTau2|chr11 (66922492-66923012)
               

               
               739-1250, gnl|Hg17|chr8 (92157252-92157746)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-549, gnl|bosTau2|chr14 (36916492-36917020)
               


               
               568-693, gnl|bosTau2|chr11 (66922288-66922415)
               

               
               568-693, gnl|Hg17|chr8 (92157075-92157192)
               

               
               568-693, gnl|Mm7|chr4 (14748251-14748131)
               


               
               739-1250, gnl|bosTau2|chr11 (66922492-66923012)
               

               
               739-1250, gnl|Hg17|chr8 (92157252-92157746)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               ski (0.146735)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               ski (0.146735)
               

               
               jej (0.0989218)

	34-549, gnl\|bosTau2\|chr14 (36916492-36917020)

	568-693, gnl\|bosTau2\|chr11 (66922288-66922415)
	568-693, gnl\|Hg17\|chr8 (92157075-92157192)
	568-693, gnl\|Mm7\|chr4 (14748251-14748131)

	739-1250, gnl\|bosTau2\|chr11 (66922492-66923012)
	739-1250, gnl\|Hg17\|chr8 (92157252-92157746)