Non-Coding RNA Search

Ss1.1-rjej36b_h7.5

Sequence:


               
               GCATCATGGGCGGGTGACGCGAGCCTGGAGGATTTGGAGGCCTGGGTTCAGGCCCCGGAG
GCTAACTGAGCAGCCCTGGGCAGCCTGCTCAACTTTCTGGAGCCTCAGCTGCCTCACTGG
GAAAAGCCCAGCTGACGTCTTTGGCAGGCTGTAAGGACCTGCCAAGAGAAGTGGACGTGA
AGGCGCTCAGTAAGCTGCGGCTCTCTCTGTGTCCGTGGGAACTTGTCACGTTCTGCAAGC
TTCTACCCAAGAGACAGGGTAGTTTTATACAACAGGTGATCTGGGGCAGGGCCTGCAGGG
GAGCGGAGGAGGAGACAGGAGGCAGGCAAGAAGGCAGATGTCACCTTCACCACCTCCCCT
TGCTCCCATTACCAGCATGTCCCAGAAGCTACGGCGGCCGGCTTTGCTGGGGGGAGTCAC
AGGCTCGCCAGGGCCAGGGCCAGGGCCAGGGGGAAAGGTGCCAGCGCGGCCTGCAGGGCT
CTTGGTCTCCAACGGCCCGCTCTTGAGACCTCCTGCGGGCACCAGAGAGTACAGATCTCC
ATCACTGACCATCGTCAACACCGCGAGCCCCAGGACTGGTGTCAGAGTGACGTGCCACTT
ACCCTACCTGCTGCCGAGGGCCAGTGTTTGCAAGTGACAGTGCGTGGCTGAGCGAGGGGA
GCTCCCGATCGCACGCCCCCTCCCTAAGCGAGTGACCGATCGCGTGCGTACCTTTCTACC
AAAGGTGTATCACTTTGCTGATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATCATGGGCGGGTGACGCGAGCCTGGAGGATTTGGAGGCCTGGGTTCAGGCCCCGGAG
GCTAACTGAGCAGCCCTGGGCAGCCTGCTCAACTTTCTGGAGCCTCAGCTGCCTCACTGG
GAAAAGCCCAGCTGACGTCTTTGGCAGGCTGTAAGGACCTGCCAAGAGAAGTGGACGTGA
AGGCGCTCAGTAAGCTGCGGCTCTCTCTGTGTCCGTGGGAACTTGTCACGTTCTGCAAGC
TTCTACCCAAGAGACAGGGTAGTTTTATACAACAGGTGATCTGGGGCAGGGCCTGCAGGG
GAGCGGAGGAGGAGACAGGAGGCAGGCAAGAAGGCAGATGTCACCTTCACCACCTCCCCT
TGCTCCCATTACCAGCATGTCCCAGAAGCTACGGCGGCCGGCTTTGCTGGGGGGAGTCAC
AGGCTCGCCAGGGCCAGGGCCAGGGCCAGGGGGAAAGGTGCCAGCGCGGCCTGCAGGGCT
CTTGGTCTCCAACGGCCCGCTCTTGAGACCTCCTGCGGGCACCAGAGAGTACAGATCTCC
ATCACTGACCATCGTCAACACCGCGAGCCCCAGGACTGGTGTCAGAGTGACGTGCCACTT
ACCCTACCTGCTGCCGAGGGCCAGTGTTTGCAAGTGACAGTGCGTGGCTGAGCGAGGGGA
GCTCCCGATCGCACGCCCCCTCCCTAAGCGAGTGACCGATCGCGTGCGTACCTTTCTACC
AAAGGTGTATCACTTTGCTGATGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               64-180, - strand, RNAz p=0.891368
               

               
               243-341, - strand, RNAz p=0.895911

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               64-180, - strand, RNAz p=0.891368
               

               
               243-341, - strand, RNAz p=0.895911

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               57-602, gnl|bosTau2|chr3 (71795799-71795273)
               

               
               57-602, gnl|Hg17|chr1 (43575854-43575122)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-602, gnl|bosTau2|chr3 (71795799-71795273)
               

               
               57-602, gnl|Hg17|chr1 (43575854-43575122)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	64-180, - strand, RNAz p=0.891368
	243-341, - strand, RNAz p=0.895911

	57-602, gnl\|bosTau2\|chr3 (71795799-71795273)
	57-602, gnl\|Hg17\|chr1 (43575854-43575122)