Ss1.1-rjej36b_o23.5
|
GGAAACTCTGAAGTAGGTATTTGCCTGTCAGCGAGCGACTGGAGTCGGGTGCGTTTCCCA
GAAAATCCAGTTGCTGACTGGACTGACATGCTCTGAAGAACTGGCAGGACGGGTGCTGCT
TCCAACTTCAGAGTCCAAAGGCCTGGCAGGTGCAGCTCTTTGGGCAAACCCCGCTCACAC
CCCGCTGGGCAAAGGATGAAAAGTCAGAGGAGCCAGACGCCTCCCGTGATTTGGTACACC
CAGTGGCAGGACAGAAAGTTCTGCTCTGGCTCGTGGCCACCAACACCTATTTAGGAAGCC
CGTGGCTCGAATGACAGCTCCAGGAGGACCCCACGTTTCCGTGAGGCAAGCCCCAAGAAT
GAGGCTGCCTGTGCTGCTGATTTTCCTGGCCCACTGGGGAGTCACCAGAGCTGGACAAGG
GAAGTTCTGGCACATCTCTGACCTGCACCTTGATCCGGACTACAAGGTATCTCAAGACCC
CCTCCAAGTGTGCCCATCTGCAGGCTCCCGGCCGGTGCTCAACGCAGGCCCCTGGGGGGA
CTACCTCTGCGATTCTCCCTGGATCCTCATCAACTCCTCCATCTACGCCATGAAGGAGAT
TGAGCCGAAGCCAGACTTCATCCTCTGGACCGGTGATGACACGCCCCACGTGCCCGATGA
GAAGCTGGGGGAGGCGGCTGTGCTGCAAATCATGGAACGCCTGAGTAAGCTCATCAGAGA
GGTCTTTCCAGATACTCAAGTCTATGCTGCTTTGGGAAATCATGACTTTCACCCCAAACA
CCAGTTGCCTGCAGGAAGCAACAATATCTACAACCAGGTAGCAGAGCTGTGGCGACCCTG
GCTCAATAACGAATCCATCGCTCTCTTCAAAGAAGGTGCCTTCTACTCTGAGAAACTGCC
GGGGCCGAGCGGGGCTGGGCGGATCGTGGTCCTCAACACCAACCTGTACTACAGCAAAAA
CGAGCAGACAGCCAACATGGCCGACCCCAGCCAGCAGTTCCAGTGGCTGGACGACGTGCT
GAGCAATGCCTCCCGAGCTGGGGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAAACTCTGAAGTAGGTATTTGCCTGTCAGCGAGCGACTGGAGTCGGGTGCGTTTCCCA
GAAAATCCAGTTGCTGACTGGACTGACATGCTCTGAAGAACTGGCAGGACGGGTGCTGCT
TCCAACTTCAGAGTCCAAAGGCCTGGCAGGTGCAGCTCTTTGGGCAAACCCCGCTCACAC
CCCGCTGGGCAAAGGATGAAAAGTCAGAGGAGCCAGACGCCTCCCGTGATTTGGTACACC
CAGTGGCAGGACAGAAAGTTCTGCTCTGGCTCGTGGCCACCAACACCTATTTAGGAAGCC
CGTGGCTCGAATGACAGCTCCAGGAGGACCCCACGTTTCCGTGAGGCAAGCCCCAAGAAT
GAGGCTGCCTGTGCTGCTGATTTTCCTGGCCCACTGGGGAGTCACCAGAGCTGGACAAGG
GAAGTTCTGGCACATCTCTGACCTGCACCTTGATCCGGACTACAAGGTATCTCAAGACCC
CCTCCAAGTGTGCCCATCTGCAGGCTCCCGGCCGGTGCTCAACGCAGGCCCCTGGGGGGA
CTACCTCTGCGATTCTCCCTGGATCCTCATCAACTCCTCCATCTACGCCATGAAGGAGAT
TGAGCCGAAGCCAGACTTCATCCTCTGGACCGGTGATGACACGCCCCACGTGCCCGATGA
GAAGCTGGGGGAGGCGGCTGTGCTGCAAATCATGGAACGCCTGAGTAAGCTCATCAGAGA
GGTCTTTCCAGATACTCAAGTCTATGCTGCTTTGGGAAATCATGACTTTCACCCCAAACA
CCAGTTGCCTGCAGGAAGCAACAATATCTACAACCAGGTAGCAGAGCTGTGGCGACCCTG
GCTCAATAACGAATCCATCGCTCTCTTCAAAGAAGGTGCCTTCTACTCTGAGAAACTGCC
GGGGCCGAGCGGGGCTGGGCGGATCGTGGTCCTCAACACCAACCTGTACTACAGCAAAAA
CGAGCAGACAGCCAACATGGCCGACCCCAGCCAGCAGTTCCAGTGGCTGGACGACGTGCT
GAGCAATGCCTCCCGAGCTGGGGA
|
|
gi|61872578|ref|XP_589479.1| |
Protein identifier
|
gi|61872578|ref|XP_589479.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-429, gnl|bosTau2|chr2 (76113284-76113712) |
| |
|
633-734, gnl|bosTau2|chr2 (76130558-76130659) |
|
633-734, gnl|canFam2|chr2 (75326214-75326081) |
|
633-734, gnl|danRer3|chr16 (558628-558754) |
|
633-734, gnl|dasNov1|scaffold_13867 (47487-47348) |
|
633-734, gnl|echTel1|scaffold_272804 (691-827) |
|
633-734, gnl|fr1|chrUn (282248748-282248639) |
|
633-734, gnl|galGal2|chr23 (1401742-1401854) |
|
633-734, gnl|hg17|chr1 (27959711-27959849) |
|
633-734, gnl|Hg17|chr1 (27959717-27959818) |
|
633-734, gnl|loxAfr1|scaffold_98787 (1172-1310) |
|
633-734, gnl|mm7|chr4 (132123627-132123493) |
|
633-734, gnl|Mm7|chr4 (132123619-132123518) |
|
633-734, gnl|monDom2|scaffold_147 (528755-528874) |
|
633-734, gnl|oryCun1|scaffold_66739 (1962-2086) |
|
633-734, gnl|panTro1|chr1 (28649695-28649833) |
|
633-734, gnl|rheMac2|chr1 (30630493-30630631) |
|
633-734, gnl|rn3|chr5 (152410178-152410310) |
|
633-734, gnl|tetNig1|chrUn_random (91704629-91704520) |
|
633-734, gnl|xenTro1|scaffold_532 (21480-21616) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-429, gnl|bosTau2|chr2 (76113284-76113712) |
| |
|
633-734, gnl|bosTau2|chr2 (76130558-76130659) |
|
633-734, gnl|canFam2|chr2 (75326214-75326081) |
|
633-734, gnl|danRer3|chr16 (558628-558754) |
|
633-734, gnl|dasNov1|scaffold_13867 (47487-47348) |
|
633-734, gnl|echTel1|scaffold_272804 (691-827) |
|
633-734, gnl|fr1|chrUn (282248748-282248639) |
|
633-734, gnl|galGal2|chr23 (1401742-1401854) |
|
633-734, gnl|hg17|chr1 (27959711-27959849) |
|
633-734, gnl|Hg17|chr1 (27959717-27959818) |
|
633-734, gnl|loxAfr1|scaffold_98787 (1172-1310) |
|
633-734, gnl|mm7|chr4 (132123627-132123493) |
|
633-734, gnl|Mm7|chr4 (132123619-132123518) |
|
633-734, gnl|monDom2|scaffold_147 (528755-528874) |
|
633-734, gnl|oryCun1|scaffold_66739 (1962-2086) |
|
633-734, gnl|panTro1|chr1 (28649695-28649833) |
|
633-734, gnl|rheMac2|chr1 (30630493-30630631) |
|
633-734, gnl|rn3|chr5 (152410178-152410310) |
|
633-734, gnl|tetNig1|chrUn_random (91704629-91704520) |
|
633-734, gnl|xenTro1|scaffold_532 (21480-21616) |
|
pty (0.285429) |
|
cty (0.20816) |
|
ton (0.1755) |
|
cli (0.152812) |
|
ute (0.132784) |
|
jej (0.0989218) |
|
pty (0.285429) |
|
cty (0.20816) |
|
ton (0.1755) |
|
cli (0.152812) |
|
ute (0.132784) |
|
jej (0.0989218) |
