Non-Coding RNA Search

Ss1.1-rjej37b_a2.5

Sequence:


               
               CCAGCCCCTCCCACCAGGCCCTGCCTGGGGCCCGAGGCCCTCCCTGAGTGGCTCTGGTGA
TGGGCGTCCCCCTCCTCTGCTGCAGTGGCCGCCCCCTCGGCTCCCTGGACCGTCCCCTGC
TTCGCCTGCCCCCACTGAGGGTCCCAGGCCCTCAAGGCCCCCTGGCCCTGGTCTCCTTAG
TTCTGAGGGTCCCAGCGGGAAGTGGAGCCTGGGGGGTCGGAAAGGGCTAGGGGGATCCGA
GGGGGAGCCAGCCTCAGGGAGCCCTAAAGGAAGCACCCCCAAATCTCAGGCGCCCCTAGA
CCTCAGCCTCAGTCCGGATATCAACACCGACGCCTCGCCCTCCAGAGCCGCACAGGACTT
TCCTTGCCTGGATGGCAGTGCTGCTGAGAGTGGCACGCCCACGGGGGCCCTGGGCGACTG
GCCTGCGCCTGCTGAGGAGCGGGAGAGCCCAGCTGCCCAGCCCCTGCTGGAGCATCAGTA
CTGAGTGGCCTGGTTCCCGCTGGGTCCTAGCCCTGGATTCAGTAACTTGGACCCCTGGCC
TTTGGGTCTCTCTACTGGACCACAGAACTGAGTGGCTTTGACTCCCACATGTGAACCCTG
ACCTCTGGCTGCCTTAGCCAGAGCACCAGAACTGAGTAGCCCAGACTTCTGACCTTGACC
CCTGATCTCTCATCCCTAATCCAGGGCCCGGGCTCCCAAAGGCAGGCAGCCTCCCAGCCA
GGCCCAAGAGCCAAACCCATGGGCTGGTCCCCCTTCAAGCCCATGGCCAGGACTGCCTTG
GCTTGCACTGTCTGCAGGGGTAGCCCCCTGACCTGGACTTGGGGCTGATATGTGGGAAGG
GAAGGTTTCTTTTTTTTTTTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCCCCTCCCACCAGGCCCTGCCTGGGGCCCGAGGCCCTCCCTGAGTGGCTCTGGTGA
TGGGCGTCCCCCTCCTCTGCTGCAGTGGCCGCCCCCTCGGCTCCCTGGACCGTCCCCTGC
TTCGCCTGCCCCCACTGAGGGTCCCAGGCCCTCAAGGCCCCCTGGCCCTGGTCTCCTTAG
TTCTGAGGGTCCCAGCGGGAAGTGGAGCCTGGGGGGTCGGAAAGGGCTAGGGGGATCCGA
GGGGGAGCCAGCCTCAGGGAGCCCTAAAGGAAGCACCCCCAAATCTCAGGCGCCCCTAGA
CCTCAGCCTCAGTCCGGATATCAACACCGACGCCTCGCCCTCCAGAGCCGCACAGGACTT
TCCTTGCCTGGATGGCAGTGCTGCTGAGAGTGGCACGCCCACGGGGGCCCTGGGCGACTG
GCCTGCGCCTGCTGAGGAGCGGGAGAGCCCAGCTGCCCAGCCCCTGCTGGAGCATCAGTA
CTGAGTGGCCTGGTTCCCGCTGGGTCCTAGCCCTGGATTCAGTAACTTGGACCCCTGGCC
TTTGGGTCTCTCTACTGGACCACAGAACTGAGTGGCTTTGACTCCCACATGTGAACCCTG
ACCTCTGGCTGCCTTAGCCAGAGCACCAGAACTGAGTAGCCCAGACTTCTGACCTTGACC
CCTGATCTCTCATCCCTAATCCAGGGCCCGGGCTCCCAAAGGCAGGCAGCCTCCCAGCCA
GGCCCAAGAGCCAAACCCATGGGCTGGTCCCCCTTCAAGCCCATGGCCAGGACTGCCTTG
GCTTGCACTGTCTGCAGGGGTAGCCCCCTGACCTGGACTTGGGGCTGATATGTGGGAAGG
GAAGGTTTCTTTTTTTTTTTTTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               120-290, - strand, RNAz p=0.968218

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-290, - strand, RNAz p=0.968218

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               151-251, + strand, RNAmicro p=0.998203

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               151-251, + strand, RNAmicro p=0.998203

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-290, gnl|bosTau2|chr29 (37819554-37819265)
               

               
               1-290, gnl|Hg17|chr11 (65160448-65160737)
               

               
               1-290, gnl|Mm7|chr19 (5560423-5560134)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-290, gnl|bosTau2|chr29 (37819554-37819265)
               

               
               1-290, gnl|Hg17|chr11 (65160448-65160737)
               

               
               1-290, gnl|Mm7|chr19 (5560423-5560134)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               jej (0.197844)
               

               
               ill (0.175593)
               

               
               lnt (0.142308)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               lnt (0.142308)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	1-290, gnl\|bosTau2\|chr29 (37819554-37819265)
	1-290, gnl\|Hg17\|chr11 (65160448-65160737)
	1-290, gnl\|Mm7\|chr19 (5560423-5560134)

	jej (0.197844)
	ill (0.175593)
	lnt (0.142308)
	ecc (0.115035)
	jca (0.11396)
	cty (0.10408)