Non-Coding RNA Search

Ss1.1-rjej38b_e12.5

Sequence:


               
               GGTGGGTTCTGCGCTCCTGCGTGTGTCTGGGTATGTGAGCTCCTTACCCGTCCGTCTGGA
AGTCTGTCAGGCGCCGGGGTCACTGGAGTGTGCTTGGGAGGATCGAGGCTGCGTGCCCTC
TTCACTCCTGGGGTGCACGATGCTCCCTGATCCTCCCCTTCACTTCCTCCCGGCCGGCCC
GCCTCCCTTGAAGTCTCCCTGCTGATCCGGTGTCTCCTCCTCCGTTCCCTCCCCTCTCTC
AGGCCACAAGCACCTTCGGAGCCCAGAGGCCCTCAGTGTGAAGGTTACCCCGAGGGGAGG
AGGGCGACGGTCCCTGGGAGGACGATGGCCGAGGGCCGCCTCTCCCAGGCCAGCATTCCA
GCGGTCGCCGTGTGGCTTCTCTTCGGGGTCTGCCTCCTGCGCACCGAAGCGGGGCAGCCG
CGGGTGACCCCTGATCTGCCCACCGCGGATAACTGCCTGAACAGCTTTACTCCCGGAGTG
CCTGCCTTCGTCCTCGACACCGACGCCTCGGTCAGAAACGGGGCCACGTTCCTGCGCTCC
CTCACCTTGCGCCGCGGCCGGGACTGCGTGCACGCCTGCTGCAGCTCCAGCGACTGCAAT
CTGGCGCTGGTGGAGTTGAAGCCCGACGGTGGGGAGGACGCCATCGCCTCCTGCTTCCTC
ATCAACTGCCTCTATGAGCAGAACTTCGTGTGCAAGTTCGCGCCCAGGGAGGGCTTCATC
AACTACCTCAGGCGGGAGGTTTACCGCTCCTACCGCGAGCTGCGGACCCAGGGCTTTGGA
GGGTCCCGGATCCCCAAGGCCTGGGACGGCATAGACTTGAAGGTACAGCCCCAGGAACCC
CTGGTGCTGAAGGGTGTGGAGGACACAGATTGGCACCTACTGCAGGGTGACACAGACGTC
AGGGTGGAGAGGAATGAACCGGATCAGGTGGAGCTATGGGGACTGAAGGAAGGCAGCTAC
CTGTTCCAGCTGACAGTGGCCGGTTCAGATGAGCCAGATAGCACATCCAACATCACGGTC
ACTGTGCTGTCTCCCAAGCAGACAGAAGAATATGGCCTCGCATCCCGCAAGGTGGGCCGC
TGCCGTGGTTCCTTCCCCCGCTGGTACTACGACCCCACAGAACAGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGGTTCTGCGCTCCTGCGTGTGTCTGGGTATGTGAGCTCCTTACCCGTCCGTCTGGA
AGTCTGTCAGGCGCCGGGGTCACTGGAGTGTGCTTGGGAGGATCGAGGCTGCGTGCCCTC
TTCACTCCTGGGGTGCACGATGCTCCCTGATCCTCCCCTTCACTTCCTCCCGGCCGGCCC
GCCTCCCTTGAAGTCTCCCTGCTGATCCGGTGTCTCCTCCTCCGTTCCCTCCCCTCTCTC
AGGCCACAAGCACCTTCGGAGCCCAGAGGCCCTCAGTGTGAAGGTTACCCCGAGGGGAGG
AGGGCGACGGTCCCTGGGAGGACGATGGCCGAGGGCCGCCTCTCCCAGGCCAGCATTCCA
GCGGTCGCCGTGTGGCTTCTCTTCGGGGTCTGCCTCCTGCGCACCGAAGCGGGGCAGCCG
CGGGTGACCCCTGATCTGCCCACCGCGGATAACTGCCTGAACAGCTTTACTCCCGGAGTG
CCTGCCTTCGTCCTCGACACCGACGCCTCGGTCAGAAACGGGGCCACGTTCCTGCGCTCC
CTCACCTTGCGCCGCGGCCGGGACTGCGTGCACGCCTGCTGCAGCTCCAGCGACTGCAAT
CTGGCGCTGGTGGAGTTGAAGCCCGACGGTGGGGAGGACGCCATCGCCTCCTGCTTCCTC
ATCAACTGCCTCTATGAGCAGAACTTCGTGTGCAAGTTCGCGCCCAGGGAGGGCTTCATC
AACTACCTCAGGCGGGAGGTTTACCGCTCCTACCGCGAGCTGCGGACCCAGGGCTTTGGA
GGGTCCCGGATCCCCAAGGCCTGGGACGGCATAGACTTGAAGGTACAGCCCCAGGAACCC
CTGGTGCTGAAGGGTGTGGAGGACACAGATTGGCACCTACTGCAGGGTGACACAGACGTC
AGGGTGGAGAGGAATGAACCGGATCAGGTGGAGCTATGGGGACTGAAGGAAGGCAGCTAC
CTGTTCCAGCTGACAGTGGCCGGTTCAGATGAGCCAGATAGCACATCCAACATCACGGTC
ACTGTGCTGTCTCCCAAGCAGACAGAAGAATATGGCCTCGCATCCCGCAAGGTGGGCCGC
TGCCGTGGTTCCTTCCCCCGCTGGTACTACGACCCCACAGAACAGATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61884725|ref|XP_583160.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61884725|ref|XP_583160.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               85-202, - strand, RNAz p=0.672303

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               85-202, - strand, RNAz p=0.672303

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               6-782, gnl|bosTau2|chr10 (26712190-26712954)
               

               
               6-782, gnl|Hg17|chr15 (38923744-38924520)
               

               
               6-782, gnl|Mm7|chr2 (118978383-118979093)
               


               
               908-1048, gnl|bosTau2|chr10 (25664654-25664794)
               

               
               908-1048, gnl|Hg17|chr15 (38932977-38933117)
               

               
               908-1048, gnl|Mm7|chr2 (118986357-118986497)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-782, gnl|bosTau2|chr10 (26712190-26712954)
               

               
               6-782, gnl|Hg17|chr15 (38923744-38924520)
               

               
               6-782, gnl|Mm7|chr2 (118978383-118979093)
               


               
               908-1048, gnl|bosTau2|chr10 (25664654-25664794)
               

               
               908-1048, gnl|Hg17|chr15 (38932977-38933117)
               

               
               908-1048, gnl|Mm7|chr2 (118986357-118986497)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nco (0.161734)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	6-782, gnl\|bosTau2\|chr10 (26712190-26712954)
	6-782, gnl\|Hg17\|chr15 (38923744-38924520)
	6-782, gnl\|Mm7\|chr2 (118978383-118979093)

	908-1048, gnl\|bosTau2\|chr10 (25664654-25664794)
	908-1048, gnl\|Hg17\|chr15 (38932977-38933117)
	908-1048, gnl\|Mm7\|chr2 (118986357-118986497)