Non-Coding RNA Search

Ss1.1-rjej38b_i20.5

Sequence:


               
               ACTATGCGCTGACCGCCATCGGCCTGGGGATGCTTGTCCTCGGGGTCATCATGGCCATGT
GGAACTTGGTCCCCGGGTTCAGTGCTTCTGAAAAGCCGACCGCTCAGGGGAACAATAAGA
CAGAAATCGGGAGCAGCATCCTCAAGAGCAAGACCTTCTCCGTGGCCTACGTGCTGGTGG
GCGCTGGGGTGATGCTCCTGCTGCTGTCCATCTGCCTGAGCATCCGGGACAAGAGGAAGC
AGCGGCAAGGCGAGGAGCTGGCGCACATCCAGCAGCCGGGGGTCGAGCCTCACGCCCAGG
AGGAAGACAGCCAGGAAGAGGAGGAGGAGGCCTCTTCAAGGTACTATGTCCCCAGCTACG
AGGAAGTGATGAACACGAATTACTCGGAAGCGAGGGAACCAGACCAGAACCCCAGGATGA
GCATTTCTCTCCCCTCCTATGAGTCTCTGACGGGGCTGGACGAGACGAGCCCCACCACAA
CTAGGGCCGACATAGAGACCAGCCCAGGGAACCCCCCCGACAGGCAGAACTCCAAGCTGG
CCAAACGCCTGAAGCCGCTGAAAGTTCGAAGGATAAAATCCGAAAGGCTGCACCTCAAAG
ACTTTAGGATCAACCTGCCAGACAAAAATGTGCCTCCCCCATCCATCGAGCCTTTGACTC
CCCCTCCACAGTACGAGGAGGTCCAGGAGAAGGCCCCCGATGCCCGGCCTCCCGACTGAC
GGACCCTCCCGGGCGTGTTCCCTCCTGTCACTCATCCTCTGCACCAACAGACCCCAGATG
AAGCCACTACAGTCACTGTTGAGAAGCGGAGGGGCCGGATGTGTACTTAGCAATTTGGGC
TGGGGGGGGAGGTGAGAGGTTCTGGGATTTAGGAGCGACTCTGCTGTCCCCAGACCCTCA
TGTAGCAGGTGCATCGGAAAGAGCTGCTGCCTTGGAGACTCTGCCGTCCCTAGACCCTCA
TGTAGCAGGTGCATCGGAAAGAGCTGCTGCCTTGGATCTCGGGATGCAGTGACCCCATCC
AGGGACTCGGCACACAAGCATCTTCCCTGTTCTTGCTCAGCTCTGAATGGTCCAGGACAG
CCCTCCTCAATCCAGTTAGGAAAGGATACCCAGCAGCTGGTTTAGTGTGTCTGGTTTTGT
TTTGCTTCCACTAGGACAGTTTGGTTCCCAAAAGATAACAAGTTAATGCCTTTGCTCTCT
CACTGGCGTCCCAAACTGTGGGTAGGAGATAGGACCAGCTTTGTAGAAAGGACATGGGCC
CGTTTCATGAGTTAAGCAAAACGAGAGGCTGGAGGATTACATGGGGGTGAGGCCTGGGGT
GGAGGGAGGGGTTCCCAGAGCCCCTAATGCCATCAGTTCTTGTGAGGGCCCAAGGCCTGA
GGATGCATAAGATCCTCGTTTTAATCGGTCGACTTTACTCGTCTCATGTGAAATGGCAAA
AAAGGAAAAGCTGTATGAGATGTTCTGTTCCCTCTAAAGCCGTGCAGTTGAGCTTTTGTA
ATAAAATGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTATGCGCTGACCGCCATCGGCCTGGGGATGCTTGTCCTCGGGGTCATCATGGCCATGT
GGAACTTGGTCCCCGGGTTCAGTGCTTCTGAAAAGCCGACCGCTCAGGGGAACAATAAGA
CAGAAATCGGGAGCAGCATCCTCAAGAGCAAGACCTTCTCCGTGGCCTACGTGCTGGTGG
GCGCTGGGGTGATGCTCCTGCTGCTGTCCATCTGCCTGAGCATCCGGGACAAGAGGAAGC
AGCGGCAAGGCGAGGAGCTGGCGCACATCCAGCAGCCGGGGGTCGAGCCTCACGCCCAGG
AGGAAGACAGCCAGGAAGAGGAGGAGGAGGCCTCTTCAAGGTACTATGTCCCCAGCTACG
AGGAAGTGATGAACACGAATTACTCGGAAGCGAGGGAACCAGACCAGAACCCCAGGATGA
GCATTTCTCTCCCCTCCTATGAGTCTCTGACGGGGCTGGACGAGACGAGCCCCACCACAA
CTAGGGCCGACATAGAGACCAGCCCAGGGAACCCCCCCGACAGGCAGAACTCCAAGCTGG
CCAAACGCCTGAAGCCGCTGAAAGTTCGAAGGATAAAATCCGAAAGGCTGCACCTCAAAG
ACTTTAGGATCAACCTGCCAGACAAAAATGTGCCTCCCCCATCCATCGAGCCTTTGACTC
CCCCTCCACAGTACGAGGAGGTCCAGGAGAAGGCCCCCGATGCCCGGCCTCCCGACTGAC
GGACCCTCCCGGGCGTGTTCCCTCCTGTCACTCATCCTCTGCACCAACAGACCCCAGATG
AAGCCACTACAGTCACTGTTGAGAAGCGGAGGGGCCGGATGTGTACTTAGCAATTTGGGC
TGGGGGGGGAGGTGAGAGGTTCTGGGATTTAGGAGCGACTCTGCTGTCCCCAGACCCTCA
TGTAGCAGGTGCATCGGAAAGAGCTGCTGCCTTGGAGACTCTGCCGTCCCTAGACCCTCA
TGTAGCAGGTGCATCGGAAAGAGCTGCTGCCTTGGATCTCGGGATGCAGTGACCCCATCC
AGGGACTCGGCACACAAGCATCTTCCCTGTTCTTGCTCAGCTCTGAATGGTCCAGGACAG
CCCTCCTCAATCCAGTTAGGAAAGGATACCCAGCAGCTGGTTTAGTGTGTCTGGTTTTGT
TTTGCTTCCACTAGGACAGTTTGGTTCCCAAAAGATAACAAGTTAATGCCTTTGCTCTCT
CACTGGCGTCCCAAACTGTGGGTAGGAGATAGGACCAGCTTTGTAGAAAGGACATGGGCC
CGTTTCATGAGTTAAGCAAAACGAGAGGCTGGAGGATTACATGGGGGTGAGGCCTGGGGT
GGAGGGAGGGGTTCCCAGAGCCCCTAATGCCATCAGTTCTTGTGAGGGCCCAAGGCCTGA
GGATGCATAAGATCCTCGTTTTAATCGGTCGACTTTACTCGTCTCATGTGAAATGGCAAA
AAAGGAAAAGCTGTATGAGATGTTCTGTTCCCTCTAAAGCCGTGCAGTTGAGCTTTTGTA
ATAAAATGTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               TM51_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               TM51_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               308-417, + strand, RNAz p=0.835235

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               308-417, + strand, RNAz p=0.835235

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC005177, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC005177, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               308-936, gnl|bosTau2|chr16 (38486346-38486975)
               

               
               308-936, gnl|Hg17|chr1 (15291125-15291765)
               

               
               308-936, gnl|Mm7|chr4 (141410538-141409947)
               


               
               937-1512, gnl|bosTau2|chr16 (38486916-38487478)
               

               
               937-1512, gnl|Hg17|chr1 (15291705-15292270)
               

               
               937-1512, gnl|Mm7|chr4 (141409996-141409443)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               308-936, gnl|bosTau2|chr16 (38486346-38486975)
               

               
               308-936, gnl|Hg17|chr1 (15291125-15291765)
               

               
               308-936, gnl|Mm7|chr4 (141410538-141409947)
               


               
               937-1512, gnl|bosTau2|chr16 (38486916-38487478)
               

               
               937-1512, gnl|Hg17|chr1 (15291705-15292270)
               

               
               937-1512, gnl|Mm7|chr4 (141409996-141409443)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	308-936, gnl\|bosTau2\|chr16 (38486346-38486975)
	308-936, gnl\|Hg17\|chr1 (15291125-15291765)
	308-936, gnl\|Mm7\|chr4 (141410538-141409947)

	937-1512, gnl\|bosTau2\|chr16 (38486916-38487478)
	937-1512, gnl\|Hg17\|chr1 (15291705-15292270)
	937-1512, gnl\|Mm7\|chr4 (141409996-141409443)

	col (0.195008)
	cmu (0.186393)
	sto (0.179824)
	cje (0.165235)
	cki (0.165235)
	che (0.136314)
	ute (0.132784)
	jca (0.11396)
	jej (0.0989218)