Non-Coding RNA Search

Ss1.1-rjej39b_a19.5

Sequence:


               
               CCCCGCCTCTACCCCCGTGGTCACCCCCAAACCCTTGCGTCGCCCGGTGCTTTGCAGCCC
TTCCTGAGCGCCCGCTGGGTGCCGGCACCTCGCAGCAACACCCCTCCCTCTCTTGGGACC
CCTTATTCTTACCGCGCCTTTCTCCCAGGCGCCTAAGCCCTGTTGTCTCTTCCCTCCCAG
ATGACTTCCCTCTGGAAGTCTTTCCACTGACTTTGTATTTCTGTTTCCGAATCACCGTCT
CGTGACGCCTGGTGGCCTTGAGAAGCTGAACCAGAGGCGGGACATCTCCTCCTGGCTGGC
TCGATGGTTCCCCAGAACCCCAGCCAAGCCTGTGGTGGCCCTGAAAACACCCATCAAGGT
GGAGCTGGTGGCTGGGAAAACCTACAGGTGGTGTGTGTGTGGCCGTAGCAAGAAGCAGCC
CTTCTGTGATGGCTCCCACTTCTTCCAACGCACTGGCCTATCCCCACTCAAGTTCAAGGC
CCAGGAGACCCGCGTGGTGGTGCTCTGTACCTGCAAGGCCACCCAGAAACCCCCGTACTG
CGATGGCACCCACAGGAGTGAGCGGGTGCAGAAGGCAGAAGTGGGCGCCCCACTCTGAGG
GGGTGGCTGCTGCCCGGCCCAAGAAGGATCACCCAGGGACCCCAATACCCATAGCTGGTT
TGTGAGCAGCTTGCTCCTGTAACCCAAGGTCTCCAATGTGGGGCAGCTGGGACCAGGCCC
CTGCTTCAGTGCCTGCTGGCGAAGATGGCATTAAAAAAGCATTCCATGCCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCGCCTCTACCCCCGTGGTCACCCCCAAACCCTTGCGTCGCCCGGTGCTTTGCAGCCC
TTCCTGAGCGCCCGCTGGGTGCCGGCACCTCGCAGCAACACCCCTCCCTCTCTTGGGACC
CCTTATTCTTACCGCGCCTTTCTCCCAGGCGCCTAAGCCCTGTTGTCTCTTCCCTCCCAG
ATGACTTCCCTCTGGAAGTCTTTCCACTGACTTTGTATTTCTGTTTCCGAATCACCGTCT
CGTGACGCCTGGTGGCCTTGAGAAGCTGAACCAGAGGCGGGACATCTCCTCCTGGCTGGC
TCGATGGTTCCCCAGAACCCCAGCCAAGCCTGTGGTGGCCCTGAAAACACCCATCAAGGT
GGAGCTGGTGGCTGGGAAAACCTACAGGTGGTGTGTGTGTGGCCGTAGCAAGAAGCAGCC
CTTCTGTGATGGCTCCCACTTCTTCCAACGCACTGGCCTATCCCCACTCAAGTTCAAGGC
CCAGGAGACCCGCGTGGTGGTGCTCTGTACCTGCAAGGCCACCCAGAAACCCCCGTACTG
CGATGGCACCCACAGGAGTGAGCGGGTGCAGAAGGCAGAAGTGGGCGCCCCACTCTGAGG
GGGTGGCTGCTGCCCGGCCCAAGAAGGATCACCCAGGGACCCCAATACCCATAGCTGGTT
TGTGAGCAGCTTGCTCCTGTAACCCAAGGTCTCCAATGTGGGGCAGCTGGGACCAGGCCC
CTGCTTCAGTGCCTGCTGGCGAAGATGGCATTAAAAAAGCATTCCATGCCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55645287|ref|XP_511439.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55645287|ref|XP_511439.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               496-630, - strand, RNAz p=0.701573

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               496-630, - strand, RNAz p=0.701573

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               25-299, gnl|bosTau2|chr19 (31566799-31567069)
               

               
               25-299, gnl|Hg17|chr17 (34140275-34140575)
               

               
               25-299, gnl|Mm7|chr11 (97794972-97795255)
               


               
               417-755, gnl|bosTau2|chr19 (31569212-31569529)
               

               
               417-755, gnl|Hg17|chr17 (34143053-34143453)
               

               
               417-755, gnl|Mm7|chr11 (97797305-97797640)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-299, gnl|bosTau2|chr19 (31566799-31567069)
               

               
               25-299, gnl|Hg17|chr17 (34140275-34140575)
               

               
               25-299, gnl|Mm7|chr11 (97794972-97795255)
               


               
               417-755, gnl|bosTau2|chr19 (31569212-31569529)
               

               
               417-755, gnl|Hg17|chr17 (34143053-34143453)
               

               
               417-755, gnl|Mm7|chr11 (97797305-97797640)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               col (0.390016)
               

               
               jej (0.296765)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               ute (0.265569)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.390016)
               

               
               jej (0.296765)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               ute (0.265569)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

	25-299, gnl\|bosTau2\|chr19 (31566799-31567069)
	25-299, gnl\|Hg17\|chr17 (34140275-34140575)
	25-299, gnl\|Mm7\|chr11 (97794972-97795255)

	417-755, gnl\|bosTau2\|chr19 (31569212-31569529)
	417-755, gnl\|Hg17\|chr17 (34143053-34143453)
	417-755, gnl\|Mm7\|chr11 (97797305-97797640)

	col (0.390016)
	jej (0.296765)
	hyp (0.285673)
	cga (0.279096)
	ute (0.265569)
	bla (0.248694)
	nms (0.213858)
	fcc (0.197785)
	nep (0.183925)
	ill (0.175593)
	fbs (0.175346)
	fhi (0.169578)
	nje (0.16592)
	cki (0.165235)
	csp (0.161186)
	cli (0.152812)
	cag (0.151194)
	lnt (0.142308)
	pla (0.133672)
	cov (0.132153)
	cbr (0.127975)
	eep (0.122564)
	eje (0.0988338)