Non-Coding RNA Search

Ss1.1-rjej39b_b9.5

Sequence:


               
               CCACGGCCGACGTCTTCTGCCTCAACACCTACTCCTCCAGAATCGTGCGGCATGCAACAC
CCAGGTTGAACCCGCCCTCCTACGAAGACGACCAGGAGCTGACGGAGGAGGAAGATCCTT
CCTGGCCTTCGACAGCAGTGAACAGAGCTGCGTCTTGGGGGATGCGAAGACTGCTCAACT
GGATCAAGGAAGAGTATGGCGACATCCCCATTTACATCACGGAAAACGGAGTGGGGCTGA
CAGATCCGGGAGTGGAAGATACCGATAGGATATTTTACCACAAAACCTATATCAATGAAG
CTTTGAAAGCCTACAGGCTCGATGGTGTCGACCTTCGAGGCTATGCAGCATGGTCTCTGA
TGGACAACTTTGAGTGGCTGAACGGATACACAGTCAAGTTTGGACTGTACCATGTTGATT
TCAACAATGTGAATAGACCTCGCACTGCAAGAGCCTCCGCCAGGTACTACACAGAGGTCA
TCACCAACAACGGCATGCCCCTGCCCGCGGAGGATGAGTTTCTGTATGGCCAGTTTCCCG
AGGGCTTCATCTGGAGTGCGGCTACTGCTGCATATCAGATCGAAGGTGCATGGAGAGCAG
ATGGCAAAGGACTCAGTATTTGGGACACGTTTTCTCACACACCACTGAAGATTGAGAACA
ATGACATTGGAGATATGGCCTGTGACAGTTATCACAAGATTGCTGAGGATGTAGTCGCCC
TGCAGAACCTGGGTGTGTCCCACTATCGACTTTCCATCTCTTGGACTCGCATCCTCCCTG
ATGGAACCACCAAGTACATCAATGAAGCAGGCCTGGACTACTATGTGCGGCTCATTGACG
CCCTGCTGGCTGCCAACATCCAGCCCCAGGTGACCATTTACCACTGGGACCTGCCCCAGG
CACTTCAGGATGTTGGAGGCTGGGAGAATGAGACCATTGTGCAGCGGTTTAAGGAGTATG
CAGATGTGCTTTTCCAGAGGCTAGGGGACAAGGTGAAGTTTGGGATCACACTGAATGAGC
CCTTTGTTGTGGCTCAGCAAGGCTACGGTTCTGGAACATTTGCTCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGGCCGACGTCTTCTGCCTCAACACCTACTCCTCCAGAATCGTGCGGCATGCAACAC
CCAGGTTGAACCCGCCCTCCTACGAAGACGACCAGGAGCTGACGGAGGAGGAAGATCCTT
CCTGGCCTTCGACAGCAGTGAACAGAGCTGCGTCTTGGGGGATGCGAAGACTGCTCAACT
GGATCAAGGAAGAGTATGGCGACATCCCCATTTACATCACGGAAAACGGAGTGGGGCTGA
CAGATCCGGGAGTGGAAGATACCGATAGGATATTTTACCACAAAACCTATATCAATGAAG
CTTTGAAAGCCTACAGGCTCGATGGTGTCGACCTTCGAGGCTATGCAGCATGGTCTCTGA
TGGACAACTTTGAGTGGCTGAACGGATACACAGTCAAGTTTGGACTGTACCATGTTGATT
TCAACAATGTGAATAGACCTCGCACTGCAAGAGCCTCCGCCAGGTACTACACAGAGGTCA
TCACCAACAACGGCATGCCCCTGCCCGCGGAGGATGAGTTTCTGTATGGCCAGTTTCCCG
AGGGCTTCATCTGGAGTGCGGCTACTGCTGCATATCAGATCGAAGGTGCATGGAGAGCAG
ATGGCAAAGGACTCAGTATTTGGGACACGTTTTCTCACACACCACTGAAGATTGAGAACA
ATGACATTGGAGATATGGCCTGTGACAGTTATCACAAGATTGCTGAGGATGTAGTCGCCC
TGCAGAACCTGGGTGTGTCCCACTATCGACTTTCCATCTCTTGGACTCGCATCCTCCCTG
ATGGAACCACCAAGTACATCAATGAAGCAGGCCTGGACTACTATGTGCGGCTCATTGACG
CCCTGCTGGCTGCCAACATCCAGCCCCAGGTGACCATTTACCACTGGGACCTGCCCCAGG
CACTTCAGGATGTTGGAGGCTGGGAGAATGAGACCATTGTGCAGCGGTTTAAGGAGTATG
CAGATGTGCTTTTCCAGAGGCTAGGGGACAAGGTGAAGTTTGGGATCACACTGAATGAGC
CCTTTGTTGTGGCTCAGCAAGGCTACGGTTCTGGAACATTTGCTCCAG

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               3-309, gnl|bosTau2|chr2 (37925385-37925691)
               

               
               3-309, gnl|canFam2|chr19 (41611122-41611503)
               

               
               3-309, gnl|danRer3|chr9 (42646510-42646889)
               

               
               3-309, gnl|dasNov1|scaffold_47286 (506-886)
               

               
               3-309, gnl|echTel1|scaffold_175466 (4782-5163)
               

               
               3-309, gnl|fr1|chrUn (26888838-26889217)
               

               
               3-309, gnl|galGal2|chr7 (31333735-31334112)
               

               
               3-309, gnl|hg17|chr2 (136399731-136400112)
               

               
               3-309, gnl|Hg17|chr2 (136400051-136399745)
               

               
               3-309, gnl|loxAfr1|scaffold_3003 (13812-13435)
               

               
               3-309, gnl|mm7|chr1 (128179956-128180340)
               

               
               3-309, gnl|Mm7|chr1 (128180279-128179970)
               

               
               3-309, gnl|monDom2|scaffold_2 (21409911-21410292)
               

               
               3-309, gnl|oryCun1|scaffold_195653 (55678-56059)
               

               
               3-309, gnl|panTro1|chr13 (25391254-25391635)
               

               
               3-309, gnl|rheMac2|chr13 (116349714-116349333)
               

               
               3-309, gnl|rn3|chr13 (41018434-41018812)
               

               
               3-309, gnl|tetNig1|chr2 (16082052-16081675)
               

               
               3-309, gnl|xenTro1|scaffold_31 (1426319-1425938)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-309, gnl|bosTau2|chr2 (37925385-37925691)
               

               
               3-309, gnl|canFam2|chr19 (41611122-41611503)
               

               
               3-309, gnl|danRer3|chr9 (42646510-42646889)
               

               
               3-309, gnl|dasNov1|scaffold_47286 (506-886)
               

               
               3-309, gnl|echTel1|scaffold_175466 (4782-5163)
               

               
               3-309, gnl|fr1|chrUn (26888838-26889217)
               

               
               3-309, gnl|galGal2|chr7 (31333735-31334112)
               

               
               3-309, gnl|hg17|chr2 (136399731-136400112)
               

               
               3-309, gnl|Hg17|chr2 (136400051-136399745)
               

               
               3-309, gnl|loxAfr1|scaffold_3003 (13812-13435)
               

               
               3-309, gnl|mm7|chr1 (128179956-128180340)
               

               
               3-309, gnl|Mm7|chr1 (128180279-128179970)
               

               
               3-309, gnl|monDom2|scaffold_2 (21409911-21410292)
               

               
               3-309, gnl|oryCun1|scaffold_195653 (55678-56059)
               

               
               3-309, gnl|panTro1|chr13 (25391254-25391635)
               

               
               3-309, gnl|rheMac2|chr13 (116349714-116349333)
               

               
               3-309, gnl|rn3|chr13 (41018434-41018812)
               

               
               3-309, gnl|tetNig1|chr2 (16082052-16081675)
               

               
               3-309, gnl|xenTro1|scaffold_31 (1426319-1425938)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               jej (0.395687)
               

               
               nje (0.16592)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.395687)
               

               
               nje (0.16592)

	3-309, gnl\|bosTau2\|chr2 (37925385-37925691)
	3-309, gnl\|canFam2\|chr19 (41611122-41611503)
	3-309, gnl\|danRer3\|chr9 (42646510-42646889)
	3-309, gnl\|dasNov1\|scaffold_47286 (506-886)
	3-309, gnl\|echTel1\|scaffold_175466 (4782-5163)
	3-309, gnl\|fr1\|chrUn (26888838-26889217)
	3-309, gnl\|galGal2\|chr7 (31333735-31334112)
	3-309, gnl\|hg17\|chr2 (136399731-136400112)
	3-309, gnl\|Hg17\|chr2 (136400051-136399745)
	3-309, gnl\|loxAfr1\|scaffold_3003 (13812-13435)
	3-309, gnl\|mm7\|chr1 (128179956-128180340)
	3-309, gnl\|Mm7\|chr1 (128180279-128179970)
	3-309, gnl\|monDom2\|scaffold_2 (21409911-21410292)
	3-309, gnl\|oryCun1\|scaffold_195653 (55678-56059)
	3-309, gnl\|panTro1\|chr13 (25391254-25391635)
	3-309, gnl\|rheMac2\|chr13 (116349714-116349333)
	3-309, gnl\|rn3\|chr13 (41018434-41018812)
	3-309, gnl\|tetNig1\|chr2 (16082052-16081675)
	3-309, gnl\|xenTro1\|scaffold_31 (1426319-1425938)