Ss1.1-rjej39b_i18.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCGGAGGGCGCTGTGGCTCGGCTTGCGCCGGGGCCTCTTGGGCCGGGAGCTAGGCACAC GCAGAGGAGGCTCTACTCTGGACTGGGATGGAAAAGTGTCCGATATTAAGAAGAAGATCC AGTCCATCCTTCCTGGAGGGGCCTGGAAGCCACTGTACGACACCAGCCACCTGCCCCCTG AACAAGCAGATGTGGTGATTGTGGGGGGTGGGGTGCTTGGCCTGTCCGTGGCCTATTGGC TGAAGAGGTTGGAAAAGCGGCGAGGTGCCATTCGGGTGCTGGTGGTGGAGCGGGACCACA CGTATTCCCAGGCCTCCACGGTGCTTTCTGTGGGCGGGATTCGTCAGCAGTTCTCACTGC CTGAGAACATCCAGCTCTCCCTCTTTTCAGCCGAATTTCTACGGAACATCAATGAGTACT TGGCTGTGGTCGATGACCCTCCCCTGGACCTCCAGTTCAACCCCTCTGGGTACCTCTTTC TGGCTTCAGAGAAGGGGGCTGCGACCATGGAAAACAACGTGAAGGTTCAGAGGCAGGAAG GAGCCAAAGTTTGTCTGATGTCTCCAGAGCAACTTCGGAAGAAGTTTCCTTGGATAAACA CAGAGGGAGTGGCTTTGGCATCTTATGGGTTGGAGAATGAAGGTTGGTTTGACCCCTGGT GTCTGCTCCAGGGGCTTCGGCGAAAAGTCCAGTCCATGGGGGTCCTTTTCTGCCAAGGAG AGGTAACACGTTTCGTCTCTTCATCTACCCACATGGAGACCATCAGTGGGGAGGAAGTGA CTTTGAAAAGGATCCATGAAGTCCAAGTGAAGATGGACTGCAGCCAGGAGTACCAGCCTG TGGAATGTGCCATAGTGGTCAACGCCGCCGGGGCCTGGTCCGGGCAAATTGCAGAGCTGG CTGGTGTTGGGAAGGGGCTGCCTGGCACTCTGCAGGGCACCAAGCTGCCTGTGGAGCCAA GGAAGAGGTATGTGTACTTGTGGCACTGCCCCCAGGGACCAGGCCTGGAGACACCGCTCG TTGCAGACCTCAGTGGAGTCTATTTCCGCCGGGAAGGACTAGGCAACAACTACCTGGGCG GCTGCAGCCCCGCCGAGGAGGAAGAACCAGACCCAGGGAACCTGGAAGTGGACCATGATT TCTTCCAAGAGAAGGTGTGGCCCCCTTTGGCCTGGAGGGTACCAGCTTTTGAGACTCTAA AGGTTCAGAGAGCTTGGGCTGGCTATTATGACTACAACACCTTTGACCAGAATGGCGTGG TCGGCCCCCACCCCCTCATCGTCAACATGTACTTTGCAACAGGCTTCAGTGGCCACGGGC TCCAGCAGGCCCCGGCCGTGGGGCGGGCCGTGGCAGAGATGGTGCTAGAAGGCCACTTCC AGACCATCAACCTGAGCCCCTTCCTTTTCACCCGCTTTTACTTGGGAGAGAAGGCCCTGG AGCACTGTATCCTCTGAGCCTCACCACAGGCTCTCCTCCACCCTCCTCTTGTCCAGGGCA TCCTGCTCCCATGTGTGGCTAGGTCGTGCTCACACCTTCTCACTGCTCAATTCCTCTCCA TGCCACCCACCAGGAGCCCAGCTGGACAGAACACCTGGCATCCTGCTCCTTCCTGGTACC GACCCAGAAGGAGACCACTGTGCCTGAGGCCCAGCCCGATGCCACCCACCAGGAGCCCAG CTGGACAGAACACCTCAGGACTGGCTCCTTCCTGGTACCGACCCAGAAGGACTGCCTCTG CCCCTCTCAGTAGACCCAGCAGAGCCCAGGCAGGGAGCATCCTGGAGCAGCCCGGCCCAG ATTACTGACTTGCCTCCTTGTTCATCAGTCAATAAATGTGATTAACTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCGGAGGGCGCTGTGGCTCGGCTTGCGCCGGGGCCTCTTGGGCCGGGAGCTAGGCACAC GCAGAGGAGGCTCTACTCTGGACTGGGATGGAAAAGTGTCCGATATTAAGAAGAAGATCC AGTCCATCCTTCCTGGAGGGGCCTGGAAGCCACTGTACGACACCAGCCACCTGCCCCCTG AACAAGCAGATGTGGTGATTGTGGGGGGTGGGGTGCTTGGCCTGTCCGTGGCCTATTGGC TGAAGAGGTTGGAAAAGCGGCGAGGTGCCATTCGGGTGCTGGTGGTGGAGCGGGACCACA CGTATTCCCAGGCCTCCACGGTGCTTTCTGTGGGCGGGATTCGTCAGCAGTTCTCACTGC CTGAGAACATCCAGCTCTCCCTCTTTTCAGCCGAATTTCTACGGAACATCAATGAGTACT TGGCTGTGGTCGATGACCCTCCCCTGGACCTCCAGTTCAACCCCTCTGGGTACCTCTTTC TGGCTTCAGAGAAGGGGGCTGCGACCATGGAAAACAACGTGAAGGTTCAGAGGCAGGAAG GAGCCAAAGTTTGTCTGATGTCTCCAGAGCAACTTCGGAAGAAGTTTCCTTGGATAAACA CAGAGGGAGTGGCTTTGGCATCTTATGGGTTGGAGAATGAAGGTTGGTTTGACCCCTGGT GTCTGCTCCAGGGGCTTCGGCGAAAAGTCCAGTCCATGGGGGTCCTTTTCTGCCAAGGAG AGGTAACACGTTTCGTCTCTTCATCTACCCACATGGAGACCATCAGTGGGGAGGAAGTGA CTTTGAAAAGGATCCATGAAGTCCAAGTGAAGATGGACTGCAGCCAGGAGTACCAGCCTG TGGAATGTGCCATAGTGGTCAACGCCGCCGGGGCCTGGTCCGGGCAAATTGCAGAGCTGG CTGGTGTTGGGAAGGGGCTGCCTGGCACTCTGCAGGGCACCAAGCTGCCTGTGGAGCCAA GGAAGAGGTATGTGTACTTGTGGCACTGCCCCCAGGGACCAGGCCTGGAGACACCGCTCG TTGCAGACCTCAGTGGAGTCTATTTCCGCCGGGAAGGACTAGGCAACAACTACCTGGGCG GCTGCAGCCCCGCCGAGGAGGAAGAACCAGACCCAGGGAACCTGGAAGTGGACCATGATT TCTTCCAAGAGAAGGTGTGGCCCCCTTTGGCCTGGAGGGTACCAGCTTTTGAGACTCTAA AGGTTCAGAGAGCTTGGGCTGGCTATTATGACTACAACACCTTTGACCAGAATGGCGTGG TCGGCCCCCACCCCCTCATCGTCAACATGTACTTTGCAACAGGCTTCAGTGGCCACGGGC TCCAGCAGGCCCCGGCCGTGGGGCGGGCCGTGGCAGAGATGGTGCTAGAAGGCCACTTCC AGACCATCAACCTGAGCCCCTTCCTTTTCACCCGCTTTTACTTGGGAGAGAAGGCCCTGG AGCACTGTATCCTCTGAGCCTCACCACAGGCTCTCCTCCACCCTCCTCTTGTCCAGGGCA TCCTGCTCCCATGTGTGGCTAGGTCGTGCTCACACCTTCTCACTGCTCAATTCCTCTCCA TGCCACCCACCAGGAGCCCAGCTGGACAGAACACCTGGCATCCTGCTCCTTCCTGGTACC GACCCAGAAGGAGACCACTGTGCCTGAGGCCCAGCCCGATGCCACCCACCAGGAGCCCAG CTGGACAGAACACCTCAGGACTGGCTCCTTCCTGGTACCGACCCAGAAGGACTGCCTCTG CCCCTCTCAGTAGACCCAGCAGAGCCCAGGCAGGGAGCATCCTGGAGCAGCCCGGCCCAG ATTACTGACTTGCCTCCTTGTTCATCAGTCAATAAATGTGATTAACTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1280-1399, + strand, RNAz p=0.701104 | |
| 1303-1457, - strand, RNAz p=0.940666 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1280-1399, + strand, RNAz p=0.701104 | |
| 1303-1457, - strand, RNAz p=0.940666 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 81-302, gnl|bosTau2|chr29 (21565707-21565486) | |
| 81-302, gnl|Hg17|chr11 (125646541-125646762) | |
| 81-302, gnl|Mm7|chr9 (35104968-35104747) | |
| 414-533, gnl|bosTau2|chr29 (21564241-21564122) | |
| 414-533, gnl|canFam2|chr5 (11245301-11245139) | |
| 414-533, gnl|echTel1|scaffold_231507 (6926-6778) | |
| 414-533, gnl|fr1|chrUn (181295354-181295485) | |
| 414-533, gnl|galGal2|chr24 (392438-392309) | |
| 414-533, gnl|hg17|chr11 (125648431-125648579) | |
| 414-533, gnl|Hg17|chr11 (125648441-125648560) | |
| 414-533, gnl|mm7|chr9 (35103970-35103823) | |
| 414-533, gnl|Mm7|chr9 (35103958-35103839) | |
| 414-533, gnl|monDom2|scaffold_15 (13210472-13210613) | |
| 414-533, gnl|oryCun1|scaffold_193901 (11925-12073) | |
| 414-533, gnl|panTro1|chr9 (127731719-127731867) | |
| 414-533, gnl|rheMac2|chr14 (124418225-124418373) | |
| 414-533, gnl|rn3|chr8 (34998445-34998298) | |
| 414-533, gnl|tetNig1|chrUn_random (29679809-29679951) | |
| 414-533, gnl|xenTro1|scaffold_709 (297359-297230) | |
| 627-731, gnl|bosTau2|chr29 (21562825-21562721) | |
| 627-731, gnl|canFam2|chr5 (11243742-11243618) | |
| 627-731, gnl|dasNov1|scaffold_92499 (4270-4141) | |
| 627-731, gnl|echTel1|scaffold_231507 (4322-4199) | |
| 627-731, gnl|fr1|chrUn (181295801-181295916) | |
| 627-731, gnl|galGal2|chr24 (392077-391951) | |
| 627-731, gnl|hg17|chr11 (125650415-125650541) | |
| 627-731, gnl|Hg17|chr11 (125650431-125650535) | |
| 627-731, gnl|loxAfr1|scaffold_64230 (3578-3701) | |
| 627-731, gnl|mm7|chr9 (35102402-35102275) | |
| 627-731, gnl|Mm7|chr9 (35102383-35102279) | |
| 627-731, gnl|monDom2|scaffold_15 (13211206-13211328) | |
| 627-731, gnl|panTro1|chr9 (127733500-127733626) | |
| 627-731, gnl|rheMac2|chr14 (124420196-124420322) | |
| 627-731, gnl|rn3|chr8 (34996948-34996821) | |
| 627-731, gnl|tetNig1|chrUn_random (29680359-29680470) | |
| 627-731, gnl|xenTro1|scaffold_709 (296586-296463) | |
| 804-969, gnl|bosTau2|chr29 (21561932-21561767) | |
| 804-969, gnl|Hg17|chr11 (125651161-125651326) | |
| 804-969, gnl|Mm7|chr9 (35100825-35100660) | |
| 1201-1459, gnl|bosTau2|chr29 (21561002-21560744) | |
| 1201-1459, gnl|canFam2|chr5 (11241920-11241703) | |
| 1201-1459, gnl|danRer3|chr10 (36909599-36909392) | |
| 1201-1459, gnl|dasNov1|scaffold_92499 (2649-2432) | |
| 1201-1459, gnl|echTel1|scaffold_231507 (2646-2428) | |
| 1201-1459, gnl|fr1|chrUn (181297518-181297718) | |
| 1201-1459, gnl|galGal2|chr24 (391099-390896) | |
| 1201-1459, gnl|hg17|chr11 (125652523-125652740) | |
| 1201-1459, gnl|Hg17|chr11 (125652538-125652796) | |
| 1201-1459, gnl|loxAfr1|scaffold_64230 (5265-5482) | |
| 1201-1459, gnl|mm7|chr9 (35099944-35099727) | |
| 1201-1459, gnl|Mm7|chr9 (35099927-35099669) | |
| 1201-1459, gnl|monDom2|scaffold_15 (13212995-13213212) | |
| 1201-1459, gnl|panTro1|chr9 (127735603-127735820) | |
| 1201-1459, gnl|rheMac2|chr14 (124423536-124423753) | |
| 1201-1459, gnl|rn3|chr8 (34994235-34994018) | |
| 1201-1459, gnl|tetNig1|chrUn_random (29682033-29682238) | |
| 1201-1459, gnl|xenTro1|scaffold_709 (290268-290054) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 81-302, gnl|bosTau2|chr29 (21565707-21565486) | |
| 81-302, gnl|Hg17|chr11 (125646541-125646762) | |
| 81-302, gnl|Mm7|chr9 (35104968-35104747) | |
| 414-533, gnl|bosTau2|chr29 (21564241-21564122) | |
| 414-533, gnl|canFam2|chr5 (11245301-11245139) | |
| 414-533, gnl|echTel1|scaffold_231507 (6926-6778) | |
| 414-533, gnl|fr1|chrUn (181295354-181295485) | |
| 414-533, gnl|galGal2|chr24 (392438-392309) | |
| 414-533, gnl|hg17|chr11 (125648431-125648579) | |
| 414-533, gnl|Hg17|chr11 (125648441-125648560) | |
| 414-533, gnl|mm7|chr9 (35103970-35103823) | |
| 414-533, gnl|Mm7|chr9 (35103958-35103839) | |
| 414-533, gnl|monDom2|scaffold_15 (13210472-13210613) | |
| 414-533, gnl|oryCun1|scaffold_193901 (11925-12073) | |
| 414-533, gnl|panTro1|chr9 (127731719-127731867) | |
| 414-533, gnl|rheMac2|chr14 (124418225-124418373) | |
| 414-533, gnl|rn3|chr8 (34998445-34998298) | |
| 414-533, gnl|tetNig1|chrUn_random (29679809-29679951) | |
| 414-533, gnl|xenTro1|scaffold_709 (297359-297230) | |
| 627-731, gnl|bosTau2|chr29 (21562825-21562721) | |
| 627-731, gnl|canFam2|chr5 (11243742-11243618) | |
| 627-731, gnl|dasNov1|scaffold_92499 (4270-4141) | |
| 627-731, gnl|echTel1|scaffold_231507 (4322-4199) | |
| 627-731, gnl|fr1|chrUn (181295801-181295916) | |
| 627-731, gnl|galGal2|chr24 (392077-391951) | |
| 627-731, gnl|hg17|chr11 (125650415-125650541) | |
| 627-731, gnl|Hg17|chr11 (125650431-125650535) | |
| 627-731, gnl|loxAfr1|scaffold_64230 (3578-3701) | |
| 627-731, gnl|mm7|chr9 (35102402-35102275) | |
| 627-731, gnl|Mm7|chr9 (35102383-35102279) | |
| 627-731, gnl|monDom2|scaffold_15 (13211206-13211328) | |
| 627-731, gnl|panTro1|chr9 (127733500-127733626) | |
| 627-731, gnl|rheMac2|chr14 (124420196-124420322) | |
| 627-731, gnl|rn3|chr8 (34996948-34996821) | |
| 627-731, gnl|tetNig1|chrUn_random (29680359-29680470) | |
| 627-731, gnl|xenTro1|scaffold_709 (296586-296463) | |
| 804-969, gnl|bosTau2|chr29 (21561932-21561767) | |
| 804-969, gnl|Hg17|chr11 (125651161-125651326) | |
| 804-969, gnl|Mm7|chr9 (35100825-35100660) | |
| 1201-1459, gnl|bosTau2|chr29 (21561002-21560744) | |
| 1201-1459, gnl|canFam2|chr5 (11241920-11241703) | |
| 1201-1459, gnl|danRer3|chr10 (36909599-36909392) | |
| 1201-1459, gnl|dasNov1|scaffold_92499 (2649-2432) | |
| 1201-1459, gnl|echTel1|scaffold_231507 (2646-2428) | |
| 1201-1459, gnl|fr1|chrUn (181297518-181297718) | |
| 1201-1459, gnl|galGal2|chr24 (391099-390896) | |
| 1201-1459, gnl|hg17|chr11 (125652523-125652740) | |
| 1201-1459, gnl|Hg17|chr11 (125652538-125652796) | |
| 1201-1459, gnl|loxAfr1|scaffold_64230 (5265-5482) | |
| 1201-1459, gnl|mm7|chr9 (35099944-35099727) | |
| 1201-1459, gnl|Mm7|chr9 (35099927-35099669) | |
| 1201-1459, gnl|monDom2|scaffold_15 (13212995-13213212) | |
| 1201-1459, gnl|panTro1|chr9 (127735603-127735820) | |
| 1201-1459, gnl|rheMac2|chr14 (124423536-124423753) | |
| 1201-1459, gnl|rn3|chr8 (34994235-34994018) | |
| 1201-1459, gnl|tetNig1|chrUn_random (29682033-29682238) | |
| 1201-1459, gnl|xenTro1|scaffold_709 (290268-290054) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| col (0.390016) | |
| fhi (0.339155) | |
| cli (0.305623) | |
| clu (0.239292) | |
| fli (0.202881) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eru (0.120048) | |
| jej (0.0989218) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.390016) | |
| fhi (0.339155) | |
| cli (0.305623) | |
| clu (0.239292) | |
| fli (0.202881) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eru (0.120048) | |
| jej (0.0989218) |