Non-Coding RNA Search

Ss1.1-rjej39b_k10.5

Sequence:


               
               AAGCCACCCAAGGTCACGTGGCATGTTAGTGGCAGAAACCCAGCCTGATTCATCCCAAGA
AGCAGCTGCTCCAGGAACAAAGGCGCCATGCAGCCCCGGGTCCTTCTTGTCGCTGGTCTC
CTGGTGCTCCTGGCCTGTGCCCAGGCTATCGAGGCCGAGGACACCTCCCTTCTGGACAAA
ATGCAGGACTATGTGAAGCAGGCCACCAGGACTGCCCAGGACGCGCTAACCAGCGTGAAG
GAGTCCGAGGTGGCCCAGCAGGCCAGGGGCTGGGTAACCGACAGTATCAGCTCTCTGAAG
GACTACTGGAGCACGTTCAAGGGCAAGTTCACCGACTTCTGGGATTATACCCCCAAGCCC
GAACCGTCTTCCTCCTGAGATCTTGATATCGCCATCTGTCTGCCCAGCCTTCCTGCCAAC
AGCCTGGGTCCTGCAGCCTCCCAGGACTGTCCCCAAAATTCCCTTGAAAGGGACAACAGC
CTCGATGCCCTCCCATCCCACCCCAGACCTGGCCTTCCAATAAAGCTGGATGAGAAACTG
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCCACCCAAGGTCACGTGGCATGTTAGTGGCAGAAACCCAGCCTGATTCATCCCAAGA
AGCAGCTGCTCCAGGAACAAAGGCGCCATGCAGCCCCGGGTCCTTCTTGTCGCTGGTCTC
CTGGTGCTCCTGGCCTGTGCCCAGGCTATCGAGGCCGAGGACACCTCCCTTCTGGACAAA
ATGCAGGACTATGTGAAGCAGGCCACCAGGACTGCCCAGGACGCGCTAACCAGCGTGAAG
GAGTCCGAGGTGGCCCAGCAGGCCAGGGGCTGGGTAACCGACAGTATCAGCTCTCTGAAG
GACTACTGGAGCACGTTCAAGGGCAAGTTCACCGACTTCTGGGATTATACCCCCAAGCCC
GAACCGTCTTCCTCCTGAGATCTTGATATCGCCATCTGTCTGCCCAGCCTTCCTGCCAAC
AGCCTGGGTCCTGCAGCCTCCCAGGACTGTCCCCAAAATTCCCTTGAAAGGGACAACAGC
CTCGATGCCCTCCCATCCCACCCCAGACCTGGCCTTCCAATAAAGCTGGATGAGAAACTG
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               APOC3_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               APOC3_PIG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               263-514, gnl|bosTau2|chr15 (13192405-13192143)
               

               
               263-514, gnl|Hg17|chr22_random (18359-18101)
               

               
               263-514, gnl|Mm7|chr9 (46191470-46191221)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               263-514, gnl|bosTau2|chr15 (13192405-13192143)
               

               
               263-514, gnl|Hg17|chr22_random (18359-18101)
               

               
               263-514, gnl|Mm7|chr9 (46191470-46191221)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cli (42.3288)
               

               
               nje (17.5875)
               

               
               fli (13.1873)
               

               
               jej (10.9803)
               

               
               eli (2.1254)
               

               
               duo (0.518403)
               

               
               cje (0.330469)
               

               
               ese (0.253004)
               

               
               nep (0.183925)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               ute (0.132784)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (42.3288)
               

               
               nje (17.5875)
               

               
               fli (13.1873)
               

               
               jej (10.9803)
               

               
               eli (2.1254)
               

               
               duo (0.518403)
               

               
               cje (0.330469)
               

               
               ese (0.253004)
               

               
               nep (0.183925)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               ute (0.132784)

	263-514, gnl\|bosTau2\|chr15 (13192405-13192143)
	263-514, gnl\|Hg17\|chr22_random (18359-18101)
	263-514, gnl\|Mm7\|chr9 (46191470-46191221)

	cli (42.3288)
	nje (17.5875)
	fli (13.1873)
	jej (10.9803)
	eli (2.1254)
	duo (0.518403)
	cje (0.330469)
	ese (0.253004)
	nep (0.183925)
	cki (0.165235)
	nco (0.161734)
	lun (0.150489)
	pty (0.142714)
	ute (0.132784)