Non-Coding RNA Search

Ss1.1-rjej39b_m23.5

Sequence:


               
               AGCCTGCAGTCTAGGGGCTGTGGGAAAGAAATGGAACCTGCAAGGTCTGGGTTCAAATTC
TGGCTCCAGCCCTTATCAGCTGTGCCACTGGGAAAGTCATGACACCTCCCTCAGCTTTAG
TTGGCCTAGCTGTCAAGTGGAGTTGGTATGATCATCCCAGAACTTGTGATGCCCAACCAG
CAGGTGGCTTCCGTCCGGGCCAGAGACGATGACTCAGGGAACAATGGGGCCATCCTGTTC
TCCATCTTCCAAGTGGACTTCGTCGCTAAAGATGGCACCGTGATCCCTTTCCAGGGCTTC
TTCCGGATCTCCACTTCTGTGGAGGACAGCGTGTTCACTGGCAACATTGAGCTGGTGACC
AGTCTTGATTCCACTCTCCAAGGCACTTACCAAGTGACGGTCAAGGCCCAGGACAGGCCT
TCCGAGGGTCCTGCCCTGGAAGCCAAAATCATGCTGAATCTCTTTACTGTGGACCAGAGT
TACCGGGTGAGGCTGCAATTTTCCATTAGCAAGGAGGACGTGGGCGCCAACATGGAGGAG
ATTAAAGCAGCTCTTGCCCAGGCGACCAGGACTACTGTCTACATTGTGAACATTCAGGAC
ATAGACTCCGCAGCTCGGGCCCGAGGCCGTTCCTACCTCGATGCTTACTTTGTCTTCTCA
AATGGCTCGGCCTTGACCCTTGACCAGCTGAGCATGATGATCCGGAATGACCAGGACTCC
CTGACGCAGCTGCTGCAGCTGGGGCTGGTGGTGCTGGGCTCCCAGGAGAGCCAGGAGTCA
GAGCTGCCCAACACTCTCCGTAACGTCGACCAGGAGAGTGGGAGCCAGGTGTGGGGCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTGCAGTCTAGGGGCTGTGGGAAAGAAATGGAACCTGCAAGGTCTGGGTTCAAATTC
TGGCTCCAGCCCTTATCAGCTGTGCCACTGGGAAAGTCATGACACCTCCCTCAGCTTTAG
TTGGCCTAGCTGTCAAGTGGAGTTGGTATGATCATCCCAGAACTTGTGATGCCCAACCAG
CAGGTGGCTTCCGTCCGGGCCAGAGACGATGACTCAGGGAACAATGGGGCCATCCTGTTC
TCCATCTTCCAAGTGGACTTCGTCGCTAAAGATGGCACCGTGATCCCTTTCCAGGGCTTC
TTCCGGATCTCCACTTCTGTGGAGGACAGCGTGTTCACTGGCAACATTGAGCTGGTGACC
AGTCTTGATTCCACTCTCCAAGGCACTTACCAAGTGACGGTCAAGGCCCAGGACAGGCCT
TCCGAGGGTCCTGCCCTGGAAGCCAAAATCATGCTGAATCTCTTTACTGTGGACCAGAGT
TACCGGGTGAGGCTGCAATTTTCCATTAGCAAGGAGGACGTGGGCGCCAACATGGAGGAG
ATTAAAGCAGCTCTTGCCCAGGCGACCAGGACTACTGTCTACATTGTGAACATTCAGGAC
ATAGACTCCGCAGCTCGGGCCCGAGGCCGTTCCTACCTCGATGCTTACTTTGTCTTCTCA
AATGGCTCGGCCTTGACCCTTGACCAGCTGAGCATGATGATCCGGAATGACCAGGACTCC
CTGACGCAGCTGCTGCAGCTGGGGCTGGTGGTGCTGGGCTCCCAGGAGAGCCAGGAGTCA
GAGCTGCCCAACACTCTCCGTAACGTCGACCAGGAGAGTGGGAGCCAGGTGTGGGGCTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874226|ref|XP_601442.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874226|ref|XP_601442.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-111, + strand, RNAz p=0.943742
               

               
               352-458, - strand, RNAz p=0.835043

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-111, + strand, RNAz p=0.943742
               

               
               352-458, - strand, RNAz p=0.835043

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-146, gnl|bosTau2|chr7 (26218189-26218334)
               

               
               1-146, gnl|Hg17|chr5 (175944653-175944806)
               


               
               185-351, gnl|bosTau2|chr7 (26221390-26221556)
               

               
               185-351, gnl|Hg17|chr5 (175948628-175948790)
               

               
               185-351, gnl|Mm7|chr13 (53816810-53816968)
               


               
               352-458, gnl|bosTau2|chr7 (26221706-26221812)
               

               
               352-458, gnl|canFam2|chr4 (39937042-39936923)
               

               
               352-458, gnl|dasNov1|scaffold_130175 (481-362)
               

               
               352-458, gnl|galGal2|chr13 (9360597-9360470)
               

               
               352-458, gnl|hg17|chr5 (175948893-175949011)
               

               
               352-458, gnl|Hg17|chr5 (175948938-175949044)
               

               
               352-458, gnl|mm7|chr13 (53817081-53817200)
               

               
               352-458, gnl|Mm7|chr13 (53817127-53817233)
               

               
               352-458, gnl|monDom2|scaffold_6 (18573352-18573250)
               

               
               352-458, gnl|oryCun1|scaffold_194170 (32871-32990)
               

               
               352-458, gnl|rheMac2|chr6 (173074275-173074393)
               

               
               352-458, gnl|rn3|chr17 (15944076-15943957)
               

               
               352-458, gnl|xenTro1|scaffold_235 (28531-28647)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-146, gnl|bosTau2|chr7 (26218189-26218334)
               

               
               1-146, gnl|Hg17|chr5 (175944653-175944806)
               


               
               185-351, gnl|bosTau2|chr7 (26221390-26221556)
               

               
               185-351, gnl|Hg17|chr5 (175948628-175948790)
               

               
               185-351, gnl|Mm7|chr13 (53816810-53816968)
               


               
               352-458, gnl|bosTau2|chr7 (26221706-26221812)
               

               
               352-458, gnl|canFam2|chr4 (39937042-39936923)
               

               
               352-458, gnl|dasNov1|scaffold_130175 (481-362)
               

               
               352-458, gnl|galGal2|chr13 (9360597-9360470)
               

               
               352-458, gnl|hg17|chr5 (175948893-175949011)
               

               
               352-458, gnl|Hg17|chr5 (175948938-175949044)
               

               
               352-458, gnl|mm7|chr13 (53817081-53817200)
               

               
               352-458, gnl|Mm7|chr13 (53817127-53817233)
               

               
               352-458, gnl|monDom2|scaffold_6 (18573352-18573250)
               

               
               352-458, gnl|oryCun1|scaffold_194170 (32871-32990)
               

               
               352-458, gnl|rheMac2|chr6 (173074275-173074393)
               

               
               352-458, gnl|rn3|chr17 (15944076-15943957)
               

               
               352-458, gnl|xenTro1|scaffold_235 (28531-28647)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               jej (0.197844)
               

               
               nco (0.161734)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               nco (0.161734)

	1-111, + strand, RNAz p=0.943742
	352-458, - strand, RNAz p=0.835043

	1-146, gnl\|bosTau2\|chr7 (26218189-26218334)
	1-146, gnl\|Hg17\|chr5 (175944653-175944806)

	185-351, gnl\|bosTau2\|chr7 (26221390-26221556)
	185-351, gnl\|Hg17\|chr5 (175948628-175948790)
	185-351, gnl\|Mm7\|chr13 (53816810-53816968)

	352-458, gnl\|bosTau2\|chr7 (26221706-26221812)
	352-458, gnl\|canFam2\|chr4 (39937042-39936923)
	352-458, gnl\|dasNov1\|scaffold_130175 (481-362)
	352-458, gnl\|galGal2\|chr13 (9360597-9360470)
	352-458, gnl\|hg17\|chr5 (175948893-175949011)
	352-458, gnl\|Hg17\|chr5 (175948938-175949044)
	352-458, gnl\|mm7\|chr13 (53817081-53817200)
	352-458, gnl\|Mm7\|chr13 (53817127-53817233)
	352-458, gnl\|monDom2\|scaffold_6 (18573352-18573250)
	352-458, gnl\|oryCun1\|scaffold_194170 (32871-32990)
	352-458, gnl\|rheMac2\|chr6 (173074275-173074393)
	352-458, gnl\|rn3\|chr17 (15944076-15943957)
	352-458, gnl\|xenTro1\|scaffold_235 (28531-28647)