Non-Coding RNA Search

Ss1.1-rjej40b_a9.5

Sequence:


               
               TTGAAAACCTGGACAGGTTCCATTACCATGGGCCTAACTTATACAAGTGAATGAGTTTCA
GATGAAAATCCATCATAGGATTAGTGGGTCCTTAGACACTTGGTTTTATTTTGACTCAAG
AAATACATTAAAACTTAGTTCATAGCAATAAGTGTAAATTTTAGCACATGGAACCTAATT
TCTTTCCCTGCCCTGTAACTGTACTTGCGGAAGCACAGTCAAGGGCTTGTTGTTGGCTTC
ACCATTGCGCAGCAAAATGATTGTGCTCATCCTTGAGGTATGGGACATGAAGCAGTTTTT
GGTTTGTACACTTATGATTAGCAATTAATATCTTTTTTGTTTAGGGATGTTGAAATAATG
CAGTAGCTTCCAAAGCTTTGCTCTCACCTAACGCCTGTCCCCACCACTCAGGGGACAGCC
TTCCTCCTGATGAAGATGTCTGGGTGTCAGAAGTTGTGATGGCCTGACTCACTGCCCAAG
AGGTGACAGGGAGGCTGGGAGCACCTTTGTTAAACTGTGTACAGTTCTGTTTTGTAGGGC
AGGGCCCTTTGTAGGGTGTGTGTATGAACACACATGCTTGTCTGAACTTTATGTCAGTTT
TTCTCCGAGTCCAGTTCCTCCACCCTCTTCACTTGCCAACTAAGTGGGAGGCTGTTTGGA
TGGGTTGGGCCGTTTCCATCGTGGAGACATGGAACTTTGCACATGTCAGTACTGGGGAGT
TGTTCCTGCTGTAGTGTCCACGATGAGGCTCCTTACTTACCTACCCTATTGATCACTACT
GTGCTCCCCAAAGCACTATTATTTATTCTTCCTCTGTCTGCCTGCGCCAGTACTACTGTC
AGCACATTAAATGGTTCTCAGACGCTTACCAGTGTGGACCTGGTCTGTGTCAGCCATACT
GTTTTTTAGTCATATGTATACATGTTCTGATCTTAAAATATAAATATATTCTCAAAATAA
ATTAAAATTTGTATAATGGCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAAAACCTGGACAGGTTCCATTACCATGGGCCTAACTTATACAAGTGAATGAGTTTCA
GATGAAAATCCATCATAGGATTAGTGGGTCCTTAGACACTTGGTTTTATTTTGACTCAAG
AAATACATTAAAACTTAGTTCATAGCAATAAGTGTAAATTTTAGCACATGGAACCTAATT
TCTTTCCCTGCCCTGTAACTGTACTTGCGGAAGCACAGTCAAGGGCTTGTTGTTGGCTTC
ACCATTGCGCAGCAAAATGATTGTGCTCATCCTTGAGGTATGGGACATGAAGCAGTTTTT
GGTTTGTACACTTATGATTAGCAATTAATATCTTTTTTGTTTAGGGATGTTGAAATAATG
CAGTAGCTTCCAAAGCTTTGCTCTCACCTAACGCCTGTCCCCACCACTCAGGGGACAGCC
TTCCTCCTGATGAAGATGTCTGGGTGTCAGAAGTTGTGATGGCCTGACTCACTGCCCAAG
AGGTGACAGGGAGGCTGGGAGCACCTTTGTTAAACTGTGTACAGTTCTGTTTTGTAGGGC
AGGGCCCTTTGTAGGGTGTGTGTATGAACACACATGCTTGTCTGAACTTTATGTCAGTTT
TTCTCCGAGTCCAGTTCCTCCACCCTCTTCACTTGCCAACTAAGTGGGAGGCTGTTTGGA
TGGGTTGGGCCGTTTCCATCGTGGAGACATGGAACTTTGCACATGTCAGTACTGGGGAGT
TGTTCCTGCTGTAGTGTCCACGATGAGGCTCCTTACTTACCTACCCTATTGATCACTACT
GTGCTCCCCAAAGCACTATTATTTATTCTTCCTCTGTCTGCCTGCGCCAGTACTACTGTC
AGCACATTAAATGGTTCTCAGACGCTTACCAGTGTGGACCTGGTCTGTGTCAGCCATACT
GTTTTTTAGTCATATGTATACATGTTCTGATCTTAAAATATAAATATATTCTCAAAATAA
ATTAAAATTTGTATAATGGCATTT

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               710-984, gnl|bosTau2|chr19 (49676799-49677067)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               710-984, gnl|bosTau2|chr19 (49676799-49677067)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               fty (0.351679)
               

               
               fce (0.271592)
               

               
               hea (0.204499)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               fce (0.271592)
               

               
               hea (0.204499)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	fty (0.351679)
	fce (0.271592)
	hea (0.204499)
	duo (0.172801)
	eye (0.170503)
	ova (0.129132)
	eep (0.122564)
	med (0.116252)
	nbm (0.0993246)
	jej (0.0989218)