Ss1.1-rjej40b_e7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGTTCCACATTCCTTCAAGTGTGCCTTACATCAGGTACTTTGTCAGCTTCATCATCCA GTTCCAGTTTCATGAGGCACTGTGCCAGGCGGCGGGCCACAAAGGCCCCCTGCACAAGTG TGACATCTACCAGTCCAAGGAAGCCGGGAGGCGCCTGGCGGACGCCATGAAGCTGGGCCT CAGTAAGCCGTGGCCTGAAGCCATGCAGCTGATCACGGGCCAGCCCAACGTGTCCGCCTC CGCCATGATGACCTACTTCAAGCCGCTGCTGGACTGGCTTGTGACGGAGAACGGGCGGCA TGGGGAGAAGCTGGGCTGGCCTCAGTACAACTGGACGCCGAACTCGGCTCGCCTGGAAGG CTCCTTCGCGGGCACTGGCCGCGTCAACTTCCTGGGCCTGAACCTGGAGGAGCAGCAGGC CCGCGTGGGCCAGTGGGTGCTGCTCTTCCTGGGCGTCACCCTGCTGGTGGCCACCATGGG CCTCACCCAGCGGCTCTTCAGCATCCGCCACCAGATCCTCCGCCGGACTCACCGCGGGCC CCAGTTCGGCTCCGAGGTGGAGCTGAGACACTCCTGAGATGAGTGGTCGGGCGGGCCTGC GGGGGGGAACGGGGACAGGGCCACAGAGAGACGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGTTCCACATTCCTTCAAGTGTGCCTTACATCAGGTACTTTGTCAGCTTCATCATCCA GTTCCAGTTTCATGAGGCACTGTGCCAGGCGGCGGGCCACAAAGGCCCCCTGCACAAGTG TGACATCTACCAGTCCAAGGAAGCCGGGAGGCGCCTGGCGGACGCCATGAAGCTGGGCCT CAGTAAGCCGTGGCCTGAAGCCATGCAGCTGATCACGGGCCAGCCCAACGTGTCCGCCTC CGCCATGATGACCTACTTCAAGCCGCTGCTGGACTGGCTTGTGACGGAGAACGGGCGGCA TGGGGAGAAGCTGGGCTGGCCTCAGTACAACTGGACGCCGAACTCGGCTCGCCTGGAAGG CTCCTTCGCGGGCACTGGCCGCGTCAACTTCCTGGGCCTGAACCTGGAGGAGCAGCAGGC CCGCGTGGGCCAGTGGGTGCTGCTCTTCCTGGGCGTCACCCTGCTGGTGGCCACCATGGG CCTCACCCAGCGGCTCTTCAGCATCCGCCACCAGATCCTCCGCCGGACTCACCGCGGGCC CCAGTTCGGCTCCGAGGTGGAGCTGAGACACTCCTGAGATGAGTGGTCGGGCGGGCCTGC GGGGGGGAACGGGGACAGGGCCACAGAGAGACGGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 386-542, - strand, RNAz p=0.972718 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 386-542, - strand, RNAz p=0.972718 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 34-158, gnl|bosTau2|chr19 (40257958-40258082) | |
| 34-158, gnl|canFam2|chr9 (14655583-14655757) | |
| 34-158, gnl|danRer3|chr3 (17214962-17215100) | |
| 34-158, gnl|dasNov1|scaffold_120890 (400-579) | |
| 34-158, gnl|echTel1|scaffold_320855 (46151-46297) | |
| 34-158, gnl|fr1|chrUn (192395638-192395482) | |
| 34-158, gnl|galGal2|chr27 (1123552-1123684) | |
| 34-158, gnl|hg17|chr17 (58945017-58945195) | |
| 34-158, gnl|Hg17|chr17 (58945062-58945186) | |
| 34-158, gnl|loxAfr1|scaffold_104849 (626-804) | |
| 34-158, gnl|mm7|chr11 (106109201-106109380) | |
| 34-158, gnl|Mm7|chr11 (106109247-106109371) | |
| 34-158, gnl|monDom2|scaffold_18 (36086870-36086690) | |
| 34-158, gnl|oryCun1|scaffold_205422 (70314-70493) | |
| 34-158, gnl|panTro1|chr19 (46193238-46193060) | |
| 34-158, gnl|rheMac2|chr16 (59033159-59033335) | |
| 34-158, gnl|rn3|chr10 (95406140-95406319) | |
| 34-158, gnl|tetNig1|chr2 (4281911-4281774) | |
| 35-148, gnl|bosTau2|chr19 (40228712-40228825) | |
| 35-148, gnl|canFam2|chr9 (14629325-14629491) | |
| 35-148, gnl|danRer3|chr3 (17194048-17194215) | |
| 35-148, gnl|dasNov1|scaffold_89855 (6573-6392) | |
| 35-148, gnl|echTel1|scaffold_320855 (32628-32810) | |
| 35-148, gnl|fr1|chrUn (192400433-192400300) | |
| 35-148, gnl|galGal2|chr27 (1118244-1118422) | |
| 35-148, gnl|hg17|chr17 (58914875-58915058) | |
| 35-148, gnl|Hg17|chr17 (58914940-58915053) | |
| 35-148, gnl|loxAfr1|scaffold_29461 (16654-16476) | |
| 35-148, gnl|mm7|chr11 (106083078-106083261) | |
| 35-148, gnl|Mm7|chr11 (106083143-106083256) | |
| 35-148, gnl|monDom2|scaffold_18 (36165177-36165021) | |
| 35-148, gnl|oryCun1|scaffold_205422 (70317-70479) | |
| 35-148, gnl|panTro1|chr19 (46223514-46223331) | |
| 35-148, gnl|rheMac2|chr16 (59004113-59004297) | |
| 35-148, gnl|rn3|chr10 (95381728-95381906) | |
| 35-148, gnl|tetNig1|chr2 (4286306-4286185) | |
| 160-333, gnl|bosTau2|chr19 (40261996-40262169) | |
| 160-333, gnl|canFam2|chr9 (14659791-14660009) | |
| 160-333, gnl|echTel1|scaffold_320855 (59643-59864) | |
| 160-333, gnl|fr1|chrUn (192395376-192395173) | |
| 160-333, gnl|hg17|chr17 (58949990-58950206) | |
| 160-333, gnl|Hg17|chr17 (58950021-58950192) | |
| 160-333, gnl|mm7|chr11 (106113434-106113652) | |
| 160-333, gnl|Mm7|chr11 (106113465-106113638) | |
| 160-333, gnl|monDom2|scaffold_18 (36082727-36082507) | |
| 160-333, gnl|panTro1|chr19 (46188223-46188007) | |
| 160-333, gnl|rheMac2|chr16 (59038118-59038336) | |
| 160-333, gnl|rn3|chr10 (95411291-95411509) | |
| 347-601, gnl|bosTau2|chr19 (40243122-40243376) | |
| 347-601, gnl|Hg17|chr17 (58928229-58928527) | |
| 347-601, gnl|Mm7|chr11 (106097842-106098136) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 34-158, gnl|bosTau2|chr19 (40257958-40258082) | |
| 34-158, gnl|canFam2|chr9 (14655583-14655757) | |
| 34-158, gnl|danRer3|chr3 (17214962-17215100) | |
| 34-158, gnl|dasNov1|scaffold_120890 (400-579) | |
| 34-158, gnl|echTel1|scaffold_320855 (46151-46297) | |
| 34-158, gnl|fr1|chrUn (192395638-192395482) | |
| 34-158, gnl|galGal2|chr27 (1123552-1123684) | |
| 34-158, gnl|hg17|chr17 (58945017-58945195) | |
| 34-158, gnl|Hg17|chr17 (58945062-58945186) | |
| 34-158, gnl|loxAfr1|scaffold_104849 (626-804) | |
| 34-158, gnl|mm7|chr11 (106109201-106109380) | |
| 34-158, gnl|Mm7|chr11 (106109247-106109371) | |
| 34-158, gnl|monDom2|scaffold_18 (36086870-36086690) | |
| 34-158, gnl|oryCun1|scaffold_205422 (70314-70493) | |
| 34-158, gnl|panTro1|chr19 (46193238-46193060) | |
| 34-158, gnl|rheMac2|chr16 (59033159-59033335) | |
| 34-158, gnl|rn3|chr10 (95406140-95406319) | |
| 34-158, gnl|tetNig1|chr2 (4281911-4281774) | |
| 35-148, gnl|bosTau2|chr19 (40228712-40228825) | |
| 35-148, gnl|canFam2|chr9 (14629325-14629491) | |
| 35-148, gnl|danRer3|chr3 (17194048-17194215) | |
| 35-148, gnl|dasNov1|scaffold_89855 (6573-6392) | |
| 35-148, gnl|echTel1|scaffold_320855 (32628-32810) | |
| 35-148, gnl|fr1|chrUn (192400433-192400300) | |
| 35-148, gnl|galGal2|chr27 (1118244-1118422) | |
| 35-148, gnl|hg17|chr17 (58914875-58915058) | |
| 35-148, gnl|Hg17|chr17 (58914940-58915053) | |
| 35-148, gnl|loxAfr1|scaffold_29461 (16654-16476) | |
| 35-148, gnl|mm7|chr11 (106083078-106083261) | |
| 35-148, gnl|Mm7|chr11 (106083143-106083256) | |
| 35-148, gnl|monDom2|scaffold_18 (36165177-36165021) | |
| 35-148, gnl|oryCun1|scaffold_205422 (70317-70479) | |
| 35-148, gnl|panTro1|chr19 (46223514-46223331) | |
| 35-148, gnl|rheMac2|chr16 (59004113-59004297) | |
| 35-148, gnl|rn3|chr10 (95381728-95381906) | |
| 35-148, gnl|tetNig1|chr2 (4286306-4286185) | |
| 160-333, gnl|bosTau2|chr19 (40261996-40262169) | |
| 160-333, gnl|canFam2|chr9 (14659791-14660009) | |
| 160-333, gnl|echTel1|scaffold_320855 (59643-59864) | |
| 160-333, gnl|fr1|chrUn (192395376-192395173) | |
| 160-333, gnl|hg17|chr17 (58949990-58950206) | |
| 160-333, gnl|Hg17|chr17 (58950021-58950192) | |
| 160-333, gnl|mm7|chr11 (106113434-106113652) | |
| 160-333, gnl|Mm7|chr11 (106113465-106113638) | |
| 160-333, gnl|monDom2|scaffold_18 (36082727-36082507) | |
| 160-333, gnl|panTro1|chr19 (46188223-46188007) | |
| 160-333, gnl|rheMac2|chr16 (59038118-59038336) | |
| 160-333, gnl|rn3|chr10 (95411291-95411509) | |
| 347-601, gnl|bosTau2|chr19 (40243122-40243376) | |
| 347-601, gnl|Hg17|chr17 (58928229-58928527) | |
| 347-601, gnl|Mm7|chr11 (106097842-106098136) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nje (0.49776) | |
| cov (0.396458) | |
| jej (0.395687) | |
| eje (0.197668) | |
| ton (0.1755) | |
| eep (0.122564) | |
| med (0.116252) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.49776) | |
| cov (0.396458) | |
| jej (0.395687) | |
| eje (0.197668) | |
| ton (0.1755) | |
| eep (0.122564) | |
| med (0.116252) |