Non-Coding RNA Search

Ss1.1-rjej40b_f12.5

Sequence:


               
               CCTGGGCCTCCGAACTGCCCAACATATAAAGCTTGGTAAAGGCAGAGCAGATCTGGTCAG
GTTCTGAAACGCTGAGTCCAGAGCAATGTTGCTGAAGACAGTGCTCCTGCTGGCCTTGGT
GGCCCAGGTGCTGATGCTGGAGAATGGACTCCTGCGGAAGCCACCCATGGGCTGGCTGGC
CTGGGAACGCTTCCGCTGCAACATTGACTGTGACGAGGACCCAAAGAACTGCATCAGCGA
GCGGCTCTTCATGGAGATGGCCGACCGGCTGGCACAGGATGGATGGCGGGACCTGGGCTA
CGTGTACCTTAACATCGATGACTGCTGGATTGGTGGACGTGATGCCAAAGGCAACCTGAT
GCCTGATCCCAAGCGCTTCCCCCATGGCATTGCCTTCCTGGCTGACTACGCTCACTCCCT
GGGCCTGAAGCTGGGCATCTATGAGGATCTGGGCAGCTTCACCTGCATGGGTTACCCGGG
CACCACGCTAGACAAGGTGGTCCAGGATGCGCAGACCTTTGCTGAGTGGAAGGTGGACAT
GCTGAAGCTGGATGGCTGCTTCTCGACCCACAAGGAACGGGCTGAGGGGTACCCCAAGAT
GGCTGCTGCCCTGAATGCCACAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGGCCTCCGAACTGCCCAACATATAAAGCTTGGTAAAGGCAGAGCAGATCTGGTCAG
GTTCTGAAACGCTGAGTCCAGAGCAATGTTGCTGAAGACAGTGCTCCTGCTGGCCTTGGT
GGCCCAGGTGCTGATGCTGGAGAATGGACTCCTGCGGAAGCCACCCATGGGCTGGCTGGC
CTGGGAACGCTTCCGCTGCAACATTGACTGTGACGAGGACCCAAAGAACTGCATCAGCGA
GCGGCTCTTCATGGAGATGGCCGACCGGCTGGCACAGGATGGATGGCGGGACCTGGGCTA
CGTGTACCTTAACATCGATGACTGCTGGATTGGTGGACGTGATGCCAAAGGCAACCTGAT
GCCTGATCCCAAGCGCTTCCCCCATGGCATTGCCTTCCTGGCTGACTACGCTCACTCCCT
GGGCCTGAAGCTGGGCATCTATGAGGATCTGGGCAGCTTCACCTGCATGGGTTACCCGGG
CACCACGCTAGACAAGGTGGTCCAGGATGCGCAGACCTTTGCTGAGTGGAAGGTGGACAT
GCTGAAGCTGGATGGCTGCTTCTCGACCCACAAGGAACGGGCTGAGGGGTACCCCAAGAT
GGCTGCTGCCCTGAATGCCACAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61886659|ref|XP_582554.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61886659|ref|XP_582554.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               232-408, gnl|bosTau2|chr5 (68502749-68502573)
               

               
               232-408, gnl|Hg17|chr22 (40788446-40788270)
               

               
               232-408, gnl|Mm7|chr15 (82421342-82421166)
               


               
               410-588, gnl|bosTau2|chr5 (68502121-68501943)
               

               
               410-588, gnl|Hg17|chr22 (40787794-40787616)
               

               
               410-588, gnl|Mm7|chr15 (82420415-82420237)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               232-408, gnl|bosTau2|chr5 (68502749-68502573)
               

               
               232-408, gnl|Hg17|chr22 (40788446-40788270)
               

               
               232-408, gnl|Mm7|chr15 (82421342-82421166)
               


               
               410-588, gnl|bosTau2|chr5 (68502121-68501943)
               

               
               410-588, gnl|Hg17|chr22 (40787794-40787616)
               

               
               410-588, gnl|Mm7|chr15 (82420415-82420237)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               amn (0.417711)
               

               
               jej (0.197844)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               jej (0.197844)
               

               
               cty (0.10408)

	232-408, gnl\|bosTau2\|chr5 (68502749-68502573)
	232-408, gnl\|Hg17\|chr22 (40788446-40788270)
	232-408, gnl\|Mm7\|chr15 (82421342-82421166)

	410-588, gnl\|bosTau2\|chr5 (68502121-68501943)
	410-588, gnl\|Hg17\|chr22 (40787794-40787616)
	410-588, gnl\|Mm7\|chr15 (82420415-82420237)