Non-Coding RNA Search

Ss1.1-rjej40b_f14.5

Sequence:


               
               CGTCAACAGCTGCCCAGCGCTCCCAGCTCATTCCTCTGACCGACCTGTGGGGAAGCAGAG
AGGCCTGGAGAGAGGGAAGACCTGGGCCAAGGAAGAGGCAGAGGCTGCAGCCTGCCTCCC
CCTGTCCCCAGCCTGCCTCCACCGCCCTCCTCAGCCAAAGCCCCTTCGAGTCCCCTGGGG
CTCAGCCCCTCCCCCTGTCCCGGGCCCGGGCTGCCCGCGGGGCCTGCCTCCCACCATGTC
GGTGGCTGTGGAGATCTTCGGCTTCTTCATGGCAGCCCTGGGGTTGGTGCTGCTGGGGGT
GACGCTGCCGCACAGCAGCTGGCGAGTGTCCACCGTGCACGGGAACGTCATCACCACCAA
CACCATCTTCGAGAACCTCTGGTACAGCTGCGCCACCGACTCCCTCGGGGTCTACAACTG
CTGGGAGTTCCCGTCCATGCTGGCCCTCTCGGGGTACATCCAGGCCTGCCGGGCGCTCAT
GATCACCGCCATCCTCCTGGGCTTCCTGGGCCTCTTCCTGGGCATGGTGGGGCTGCGCTG
CACGAACATTGGGGGCCTGGAGCTCTCCAGGAAAACCAAGCTGGCGGCTACCGCAGGGGC
CCTACACATACTGGCCGGGGTCTGCGGGATGGTGGCTATCTCCTGGTATGCCTTCAACAT
CACCCGGGACTTCTTCGACCCCTTGTATCCGGGGACCAAGTATGAGCTGGGCCCCGCGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCAACAGCTGCCCAGCGCTCCCAGCTCATTCCTCTGACCGACCTGTGGGGAAGCAGAG
AGGCCTGGAGAGAGGGAAGACCTGGGCCAAGGAAGAGGCAGAGGCTGCAGCCTGCCTCCC
CCTGTCCCCAGCCTGCCTCCACCGCCCTCCTCAGCCAAAGCCCCTTCGAGTCCCCTGGGG
CTCAGCCCCTCCCCCTGTCCCGGGCCCGGGCTGCCCGCGGGGCCTGCCTCCCACCATGTC
GGTGGCTGTGGAGATCTTCGGCTTCTTCATGGCAGCCCTGGGGTTGGTGCTGCTGGGGGT
GACGCTGCCGCACAGCAGCTGGCGAGTGTCCACCGTGCACGGGAACGTCATCACCACCAA
CACCATCTTCGAGAACCTCTGGTACAGCTGCGCCACCGACTCCCTCGGGGTCTACAACTG
CTGGGAGTTCCCGTCCATGCTGGCCCTCTCGGGGTACATCCAGGCCTGCCGGGCGCTCAT
GATCACCGCCATCCTCCTGGGCTTCCTGGGCCTCTTCCTGGGCATGGTGGGGCTGCGCTG
CACGAACATTGGGGGCCTGGAGCTCTCCAGGAAAACCAAGCTGGCGGCTACCGCAGGGGC
CCTACACATACTGGCCGGGGTCTGCGGGATGGTGGCTATCTCCTGGTATGCCTTCAACAT
CACCCGGGACTTCTTCGACCCCTTGTATCCGGGGACCAAGTATGAGCTGGGCCCCGCGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5731817|emb|CAB52587.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5731817|emb|CAB52587.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               234-720, gnl|bosTau2|chr25 (30028102-30027613)
               

               
               234-720, gnl|Hg17|chr7 (72629032-72628543)
               

               
               234-720, gnl|Mm7|chr5 (133957723-133958212)
               


               
               250-461, gnl|bosTau2|chr12 (37939374-37939162)
               

               
               250-461, gnl|Hg17|chr13 (95003026-95003238)
               

               
               250-461, gnl|Mm7|chr14 (113258621-113258833)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               234-720, gnl|bosTau2|chr25 (30028102-30027613)
               

               
               234-720, gnl|Hg17|chr7 (72629032-72628543)
               

               
               234-720, gnl|Mm7|chr5 (133957723-133958212)
               


               
               250-461, gnl|bosTau2|chr12 (37939374-37939162)
               

               
               250-461, gnl|Hg17|chr13 (95003026-95003238)
               

               
               250-461, gnl|Mm7|chr14 (113258621-113258833)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.197844)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)

	234-720, gnl\|bosTau2\|chr25 (30028102-30027613)
	234-720, gnl\|Hg17\|chr7 (72629032-72628543)
	234-720, gnl\|Mm7\|chr5 (133957723-133958212)

	250-461, gnl\|bosTau2\|chr12 (37939374-37939162)
	250-461, gnl\|Hg17\|chr13 (95003026-95003238)
	250-461, gnl\|Mm7\|chr14 (113258621-113258833)