Non-Coding RNA Search

Ss1.1-rjej40b_f20.5

Sequence:


               
               AATGGGGAGGGGGCAGACGGCGCGGAGCGCGGCGGCGGCGGGAGTGGCGTCGAGTGTCTC
TGGGCGCCCGTCTGTGGCCAGGCAGCCAACCAGCCTAGCAGCCAGTCAGCTCGCCGCGGG
CGGCCAGGCAGCCAACCATGCTCAACTTCGGCGCTTCTCTCCAGCAAGCTGCGGAGGAAA
GAATGGAAATGATTTCTGAAAGATCAAAAGAGGGTGTGTATTCGTGGAACAAAGCTGCAG
AGAAAAGTGATTTTGAAGCCGTAGAGGCACTCATGTCTATGAGCTGCAGTTGGAAGTCTG
ATTTTAAGAAATATATTGAAAACAGACCTGTTACTCCAGTGTCTGATATGTCAGAGGAAG
AGAATCTGCTGCCCGGTACACCAGATTTTCATACGATCCCAGCATTTTGTTTGACTCCAC
CTTACAGTCCCTCTGACTTTGAACCCTCTCAAGTGTCAAATCTGATGGCACCAGCGCCAC
CTACTGGACACTTTAAATCATTGTCAGATACTGCCAAGCCTCACACGGCTACTGCACCTT
TCAAAGAGGAGAAGAGCCCGGTATCTGCCCCCAAACTCCCCAAGGCTCAGGCAACAAGTG
TGATTCGTCATACAGCTGATGCTCAGCTATGTAACCACCGATCCTGCCCAGTGAAAGCAG
CCAGCATCCTCAACTATCAGGACAATTCTTTTCGAAGAAGAACCCACCTAAATGTTGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGGGGAGGGGGCAGACGGCGCGGAGCGCGGCGGCGGCGGGAGTGGCGTCGAGTGTCTC
TGGGCGCCCGTCTGTGGCCAGGCAGCCAACCAGCCTAGCAGCCAGTCAGCTCGCCGCGGG
CGGCCAGGCAGCCAACCATGCTCAACTTCGGCGCTTCTCTCCAGCAAGCTGCGGAGGAAA
GAATGGAAATGATTTCTGAAAGATCAAAAGAGGGTGTGTATTCGTGGAACAAAGCTGCAG
AGAAAAGTGATTTTGAAGCCGTAGAGGCACTCATGTCTATGAGCTGCAGTTGGAAGTCTG
ATTTTAAGAAATATATTGAAAACAGACCTGTTACTCCAGTGTCTGATATGTCAGAGGAAG
AGAATCTGCTGCCCGGTACACCAGATTTTCATACGATCCCAGCATTTTGTTTGACTCCAC
CTTACAGTCCCTCTGACTTTGAACCCTCTCAAGTGTCAAATCTGATGGCACCAGCGCCAC
CTACTGGACACTTTAAATCATTGTCAGATACTGCCAAGCCTCACACGGCTACTGCACCTT
TCAAAGAGGAGAAGAGCCCGGTATCTGCCCCCAAACTCCCCAAGGCTCAGGCAACAAGTG
TGATTCGTCATACAGCTGATGCTCAGCTATGTAACCACCGATCCTGCCCAGTGAAAGCAG
CCAGCATCCTCAACTATCAGGACAATTCTTTTCGAAGAAGAACCCACCTAAATGTTGAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61811735|ref|XP_601083.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61811735|ref|XP_601083.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               213-372, + strand, RNAz p=0.560321
               

               
               408-527, - strand, RNAz p=0.975981
               

               
               602-719, - strand, RNAz p=0.944241

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-372, + strand, RNAz p=0.560321
               

               
               408-527, - strand, RNAz p=0.975981
               

               
               602-719, - strand, RNAz p=0.944241

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               173-407, gnl|bosTau2|chr14 (36491070-36490833)
               

               
               173-407, gnl|Hg17|chr8 (103733802-103733568)
               

               
               173-407, gnl|Mm7|chr15 (38408540-38408309)
               


               
               408-719, gnl|bosTau2|chr14 (36490726-36490415)
               

               
               408-719, gnl|Hg17|chr8 (103733465-103733154)
               

               
               408-719, gnl|Mm7|chr15 (38408214-38407903)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               173-407, gnl|bosTau2|chr14 (36491070-36490833)
               

               
               173-407, gnl|Hg17|chr8 (103733802-103733568)
               

               
               173-407, gnl|Mm7|chr15 (38408540-38408309)
               


               
               408-719, gnl|bosTau2|chr14 (36490726-36490415)
               

               
               408-719, gnl|Hg17|chr8 (103733465-103733154)
               

               
               408-719, gnl|Mm7|chr15 (38408214-38407903)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               jej (0.197844)
               

               
               ton (0.1755)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               ton (0.1755)

	213-372, + strand, RNAz p=0.560321
	408-527, - strand, RNAz p=0.975981
	602-719, - strand, RNAz p=0.944241

	173-407, gnl\|bosTau2\|chr14 (36491070-36490833)
	173-407, gnl\|Hg17\|chr8 (103733802-103733568)
	173-407, gnl\|Mm7\|chr15 (38408540-38408309)

	408-719, gnl\|bosTau2\|chr14 (36490726-36490415)
	408-719, gnl\|Hg17\|chr8 (103733465-103733154)
	408-719, gnl\|Mm7\|chr15 (38408214-38407903)