Non-Coding RNA Search

Ss1.1-rjej40b_g8.5.5

Sequence:


               
               AGGACGGTGGCAGGGCCAAGCCTTTGGGTGTCTGCTCCGGAGCGGCTCCTCACGTTTCGG
CAATGCTGAGGAGCGCGTGGGCCCAGCCGCATGGGCTGGGTTCGGTGAAGGGGTTAGGGG
AGGCAAGCCTGGCCGGCACCACCTGCCCAGGACAGCCAGACAGTCGGCCCTGGGGAGCTC
CGTGTCTCCAGGCCTGTAGAGAGTCTGTACCCTGAACTTGTTTTTCCTCTTTAACCCCCA
TGTTAAATGGAGCTGTATACCTTCCCAAGATGGCTGTGCGGTGGTATATATAAAACTATT
AGTTCAGGTTCTGGCAGTTAGCAAGCGTTCGATCATTGCTAGTAAATTTTTTTCATCGTA
ACCCAAGTTCGCCCTAGTGTCGTGCATATGATGGAAAAACTTGAACTTCCTGAGGCTTGT
GATGTCTTCAAAGGAACCACTGATGCACGTGTAGCCTGGGGCGCCCACTACTGGTCTTGA
GGCCGGAAGCGATCGATTTCTGTATCTCTTGCACTCGGCGCCGAAGGCAAAGAAGGAAGC
CCCTGCCCCTCCCAAAGCCGAAGCCAAGGCAAAGGCTTTGAAGGCCAAGAAAGCAGTGTT
GAAAGGCGTCCACAGTCACAAAAAAAAGAAGATCCGGACGTCACCCACCTTCCGACGGCC
CAAAACACTGCGACTCAGAAGGCAGCCCAAATATCCTCGGAAGAGTGCCCCTAGGAGAAA
CAAGCTTGACCACTATGCCATCATCAAGTTCCCCCTCACCACTGAGTCAGCCATGAAGAA
GATAGAAGACAACAACACACTTGTGTTCATTGTGGATGTCAAGGCCAACAAGCACCAGAT
TAAACAGGCTGTGAAGAAGCTCTATGACATTGATGTGGCTAAGGTCAACACTTTGATCAG
GCCTGATGGAGAGAAGAAGGCATATGTTCGACTAGCTCCTGACTATGATGCTTTGGATGT
TGCTAACAAAATTGGGATCATCTAAACTGAGTCCAGCTGGCTAATTCTAAATATAAAAGT
CATCACTAAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGACGGTGGCAGGGCCAAGCCTTTGGGTGTCTGCTCCGGAGCGGCTCCTCACGTTTCGG
CAATGCTGAGGAGCGCGTGGGCCCAGCCGCATGGGCTGGGTTCGGTGAAGGGGTTAGGGG
AGGCAAGCCTGGCCGGCACCACCTGCCCAGGACAGCCAGACAGTCGGCCCTGGGGAGCTC
CGTGTCTCCAGGCCTGTAGAGAGTCTGTACCCTGAACTTGTTTTTCCTCTTTAACCCCCA
TGTTAAATGGAGCTGTATACCTTCCCAAGATGGCTGTGCGGTGGTATATATAAAACTATT
AGTTCAGGTTCTGGCAGTTAGCAAGCGTTCGATCATTGCTAGTAAATTTTTTTCATCGTA
ACCCAAGTTCGCCCTAGTGTCGTGCATATGATGGAAAAACTTGAACTTCCTGAGGCTTGT
GATGTCTTCAAAGGAACCACTGATGCACGTGTAGCCTGGGGCGCCCACTACTGGTCTTGA
GGCCGGAAGCGATCGATTTCTGTATCTCTTGCACTCGGCGCCGAAGGCAAAGAAGGAAGC
CCCTGCCCCTCCCAAAGCCGAAGCCAAGGCAAAGGCTTTGAAGGCCAAGAAAGCAGTGTT
GAAAGGCGTCCACAGTCACAAAAAAAAGAAGATCCGGACGTCACCCACCTTCCGACGGCC
CAAAACACTGCGACTCAGAAGGCAGCCCAAATATCCTCGGAAGAGTGCCCCTAGGAGAAA
CAAGCTTGACCACTATGCCATCATCAAGTTCCCCCTCACCACTGAGTCAGCCATGAAGAA
GATAGAAGACAACAACACACTTGTGTTCATTGTGGATGTCAAGGCCAACAAGCACCAGAT
TAAACAGGCTGTGAAGAAGCTCTATGACATTGATGTGGCTAAGGTCAACACTTTGATCAG
GCCTGATGGAGAGAAGAAGGCATATGTTCGACTAGCTCCTGACTATGATGCTTTGGATGT
TGCTAACAAAATTGGGATCATCTAAACTGAGTCCAGCTGGCTAATTCTAAATATAAAAGT
CATCACTAAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q91YK6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q91YK6_MOUSE

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-223, gnl|bosTau2|chr19 (13686888-13687111)
               

               
               1-223, gnl|Hg17|chr17 (24071245-24071498)
               

               
               1-223, gnl|Mm7|chr11 (78265030-78264778)
               


               
               517-1050, gnl|bosTau2|chr10 (21375169-21374640)
               

               
               517-1050, gnl|Hg17|chr1 (208871253-208870727)
               

               
               517-1050, gnl|Mm7|chr14 (31603276-31603809)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-223, gnl|bosTau2|chr19 (13686888-13687111)
               

               
               1-223, gnl|Hg17|chr17 (24071245-24071498)
               

               
               1-223, gnl|Mm7|chr11 (78265030-78264778)
               


               
               517-1050, gnl|bosTau2|chr10 (21375169-21374640)
               

               
               517-1050, gnl|Hg17|chr1 (208871253-208870727)
               

               
               517-1050, gnl|Mm7|chr14 (31603276-31603809)

Expressed library(ies): 91 entry(ies)

More info

Expressed library(ies): 91 entry(ies)

Help | Less info


               
               cmu (21.6216)
               

               
               sto (18.7017)
               

               
               cut (12.7443)
               

               
               aor (11.9117)
               

               
               cst (10.6428)
               

               
               cbe (10.0478)
               

               
               csk (9.85222)
               

               
               ova (8.78099)
               

               
               mgp (8.53518)
               

               
               cki (8.42697)
               

               
               cje (8.26173)
               

               
               che (7.63359)
               

               
               thg (6.71992)
               

               
               sag (5.48145)
               

               
               cly (5.42888)
               

               
               eje (5.13936)
               

               
               spc (4.76136)
               

               
               ssp (4.60767)
               

               
               nca (4.51684)
               

               
               sme (4.27611)
               

               
               isp (4.21053)
               

               
               med (3.95257)
               

               
               cag (3.93106)
               

               
               lnt (3.84232)
               

               
               vin (3.65813)
               

               
               rec (3.63448)
               

               
               cov (3.43597)
               

               
               cte (3.22014)
               

               
               elu (3.08285)
               

               
               bfe (2.69744)
               

               
               nco (2.58774)
               

               
               eye (2.55754)
               

               
               eru (2.52101)
               

               
               gul (2.30865)
               

               
               fty (2.28592)
               

               
               hea (2.24949)
               

               
               fcc (2.17563)
               

               
               jca (2.16524)
               

               
               ebs (2.12942)
               

               
               csp (2.09542)
               

               
               pgl (2.01422)
               

               
               mcp (1.87713)
               

               
               eep (1.83846)
               

               
               ece (1.83444)
               

               
               ese (1.77103)
               

               
               fbs (1.75346)
               

               
               nlu (1.72513)
               

               
               cli (1.68093)
               

               
               amn (1.67084)
               

               
               pty (1.56986)
               

               
               hlv (1.53182)
               

               
               fhi (1.5262)
               

               
               fco (1.41487)
               

               
               cga (1.39548)
               

               
               fce (1.35796)
               

               
               lyg (1.33103)
               

               
               nmm (1.32802)
               

               
               hyp (1.28553)
               

               
               sug (1.27291)
               

               
               ecc (1.26539)
               

               
               bla (1.24347)
               

               
               sin (1.22463)
               

               
               mga (1.12144)
               

               
               mgm (1.08206)
               

               
               nms (1.06929)
               

               
               ill (1.05356)
               

               
               mas (1.05152)
               

               
               kid (1.03788)
               

               
               fli (1.0144)
               

               
               nep (0.919625)
               

               
               nbm (0.893921)
               

               
               fat (0.884564)
               

               
               ski (0.880411)
               

               
               duo (0.864006)
               

               
               jej (0.791374)
               

               
               col (0.780031)
               

               
               nje (0.66368)
               

               
               ret (0.643666)
               

               
               ute (0.531138)
               

               
               ton (0.526501)
               

               
               pro (0.512033)
               

               
               eli (0.455443)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               liv (0.292569)
               

               
               ste (0.270416)
               

               
               tes (0.207814)
               

               
               ctl (0.153069)
               

               
               pla (0.133672)
               

               
               tra (0.123092)
               

               
               clu (0.119646)

Expressed library(ies): 91 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (21.6216)
               

               
               sto (18.7017)
               

               
               cut (12.7443)
               

               
               aor (11.9117)
               

               
               cst (10.6428)
               

               
               cbe (10.0478)
               

               
               csk (9.85222)
               

               
               ova (8.78099)
               

               
               mgp (8.53518)
               

               
               cki (8.42697)
               

               
               cje (8.26173)
               

               
               che (7.63359)
               

               
               thg (6.71992)
               

               
               sag (5.48145)
               

               
               cly (5.42888)
               

               
               eje (5.13936)
               

               
               spc (4.76136)
               

               
               ssp (4.60767)
               

               
               nca (4.51684)
               

               
               sme (4.27611)
               

               
               isp (4.21053)
               

               
               med (3.95257)
               

               
               cag (3.93106)
               

               
               lnt (3.84232)
               

               
               vin (3.65813)
               

               
               rec (3.63448)
               

               
               cov (3.43597)
               

               
               cte (3.22014)
               

               
               elu (3.08285)
               

               
               bfe (2.69744)
               

               
               nco (2.58774)
               

               
               eye (2.55754)
               

               
               eru (2.52101)
               

               
               gul (2.30865)
               

               
               fty (2.28592)
               

               
               hea (2.24949)
               

               
               fcc (2.17563)
               

               
               jca (2.16524)
               

               
               ebs (2.12942)
               

               
               csp (2.09542)
               

               
               pgl (2.01422)
               

               
               mcp (1.87713)
               

               
               eep (1.83846)
               

               
               ece (1.83444)
               

               
               ese (1.77103)
               

               
               fbs (1.75346)
               

               
               nlu (1.72513)
               

               
               cli (1.68093)
               

               
               amn (1.67084)
               

               
               pty (1.56986)
               

               
               hlv (1.53182)
               

               
               fhi (1.5262)
               

               
               fco (1.41487)
               

               
               cga (1.39548)
               

               
               fce (1.35796)
               

               
               lyg (1.33103)
               

               
               nmm (1.32802)
               

               
               hyp (1.28553)
               

               
               sug (1.27291)
               

               
               ecc (1.26539)
               

               
               bla (1.24347)
               

               
               sin (1.22463)
               

               
               mga (1.12144)
               

               
               mgm (1.08206)
               

               
               nms (1.06929)
               

               
               ill (1.05356)
               

               
               mas (1.05152)
               

               
               kid (1.03788)
               

               
               fli (1.0144)
               

               
               nep (0.919625)
               

               
               nbm (0.893921)
               

               
               fat (0.884564)
               

               
               ski (0.880411)
               

               
               duo (0.864006)
               

               
               jej (0.791374)
               

               
               col (0.780031)
               

               
               nje (0.66368)
               

               
               ret (0.643666)
               

               
               ute (0.531138)
               

               
               ton (0.526501)
               

               
               pro (0.512033)
               

               
               eli (0.455443)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               liv (0.292569)
               

               
               ste (0.270416)
               

               
               tes (0.207814)
               

               
               ctl (0.153069)
               

               
               pla (0.133672)
               

               
               tra (0.123092)
               

               
               clu (0.119646)

	1-223, gnl\|bosTau2\|chr19 (13686888-13687111)
	1-223, gnl\|Hg17\|chr17 (24071245-24071498)
	1-223, gnl\|Mm7\|chr11 (78265030-78264778)

	517-1050, gnl\|bosTau2\|chr10 (21375169-21374640)
	517-1050, gnl\|Hg17\|chr1 (208871253-208870727)
	517-1050, gnl\|Mm7\|chr14 (31603276-31603809)

	cmu (21.6216)
	sto (18.7017)
	cut (12.7443)
	aor (11.9117)
	cst (10.6428)
	cbe (10.0478)
	csk (9.85222)
	ova (8.78099)
	mgp (8.53518)
	cki (8.42697)
	cje (8.26173)
	che (7.63359)
	thg (6.71992)
	sag (5.48145)
	cly (5.42888)
	eje (5.13936)
	spc (4.76136)
	ssp (4.60767)
	nca (4.51684)
	sme (4.27611)
	isp (4.21053)
	med (3.95257)
	cag (3.93106)
	lnt (3.84232)
	vin (3.65813)
	rec (3.63448)
	cov (3.43597)
	cte (3.22014)
	elu (3.08285)
	bfe (2.69744)
	nco (2.58774)
	eye (2.55754)
	eru (2.52101)
	gul (2.30865)
	fty (2.28592)
	hea (2.24949)
	fcc (2.17563)
	jca (2.16524)
	ebs (2.12942)
	csp (2.09542)
	pgl (2.01422)
	mcp (1.87713)
	eep (1.83846)
	ece (1.83444)
	ese (1.77103)
	fbs (1.75346)
	nlu (1.72513)
	cli (1.68093)
	amn (1.67084)
	pty (1.56986)
	hlv (1.53182)
	fhi (1.5262)
	fco (1.41487)
	cga (1.39548)
	fce (1.35796)
	lyg (1.33103)
	nmm (1.32802)
	hyp (1.28553)
	sug (1.27291)
	ecc (1.26539)
	bla (1.24347)
	sin (1.22463)
	mga (1.12144)
	mgm (1.08206)
	nms (1.06929)
	ill (1.05356)
	mas (1.05152)
	kid (1.03788)
	fli (1.0144)
	nep (0.919625)
	nbm (0.893921)
	fat (0.884564)
	ski (0.880411)
	duo (0.864006)
	jej (0.791374)
	col (0.780031)
	nje (0.66368)
	ret (0.643666)
	ute (0.531138)
	ton (0.526501)
	pro (0.512033)
	eli (0.455443)
	lin (0.436808)
	spl (0.429553)
	liv (0.292569)
	ste (0.270416)
	tes (0.207814)
	ctl (0.153069)
	pla (0.133672)
	tra (0.123092)
	clu (0.119646)