Non-Coding RNA Search

Ss1.1-rjej40b_h19.5

Sequence:


               
               CTCAAGAGACCACTAGTGATGATGACGGGTGGGCGAAAGCCAAGAGGGAGCTGGAGGTGG
AACCCGACCAGGGGAGGTTGGAGCTGGGCGGCGCTTCGCTTCCCGCAGAGCTTGGAGTTC
TCCCTCCCTCCCGGAGTCGGGTCGAGCTGCAGCAGCGGCGCCCTCTGCCTGCTGGTAGCC
GGCGGAAGTGCAAGACCGGAAATTGCGTGATCCGCCGGCGCCGGCACGGTGGGTAGAGAG
AGGCCTCGCAGAGTTCGGAGGTGCTGCCATGACTTCCACTGGGGTTGGCGTGAACCCTGC
GGGCTCGTCAAATGAAGCTCCCGAAATTCCAGACAACGTGGGAGATTGGCTTCGGGGCGT
CTACCGCTTTGCTACCGATAGGAATGACTTCCGGAGGAACTTGATCCTCAATTTGGGGCT
CTTTGCTGCAGGCGTTTGGCTGGCCAGGAATTTGAGTGACATTGACCTGATGGCACCTCA
GCCAGGGGTTTAGCCATAAAGACACATGGAACCCCTGTGCTGTCCTCCAACCTTCCAAAA
ACAGAGCATCCCATCTGTGACCATCACAAGACTTGCCCTGATGGCAGCTGACGTTTGATT
CAAATGGGCAGCCTTCCTTCCCTGCTTGATTTCCTTTTCTTTGCTGAGTCCACTCAGAAC
ACCCTCCTCTGGTCAGCAGGCAGGCCTCAGCTAAAGTGTTCTTCTCTGTTCTGTAAAGTT
CTGTACATAGTTCCTAAGTTTCTGCAGGGGCTTATCTTTGCTCTTGTCCTGAGGAATAAT
CTAATGGTATTTTAACAAATATTTGAAATAAAGACTCTACACAAAGACAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAAGAGACCACTAGTGATGATGACGGGTGGGCGAAAGCCAAGAGGGAGCTGGAGGTGG
AACCCGACCAGGGGAGGTTGGAGCTGGGCGGCGCTTCGCTTCCCGCAGAGCTTGGAGTTC
TCCCTCCCTCCCGGAGTCGGGTCGAGCTGCAGCAGCGGCGCCCTCTGCCTGCTGGTAGCC
GGCGGAAGTGCAAGACCGGAAATTGCGTGATCCGCCGGCGCCGGCACGGTGGGTAGAGAG
AGGCCTCGCAGAGTTCGGAGGTGCTGCCATGACTTCCACTGGGGTTGGCGTGAACCCTGC
GGGCTCGTCAAATGAAGCTCCCGAAATTCCAGACAACGTGGGAGATTGGCTTCGGGGCGT
CTACCGCTTTGCTACCGATAGGAATGACTTCCGGAGGAACTTGATCCTCAATTTGGGGCT
CTTTGCTGCAGGCGTTTGGCTGGCCAGGAATTTGAGTGACATTGACCTGATGGCACCTCA
GCCAGGGGTTTAGCCATAAAGACACATGGAACCCCTGTGCTGTCCTCCAACCTTCCAAAA
ACAGAGCATCCCATCTGTGACCATCACAAGACTTGCCCTGATGGCAGCTGACGTTTGATT
CAAATGGGCAGCCTTCCTTCCCTGCTTGATTTCCTTTTCTTTGCTGAGTCCACTCAGAAC
ACCCTCCTCTGGTCAGCAGGCAGGCCTCAGCTAAAGTGTTCTTCTCTGTTCTGTAAAGTT
CTGTACATAGTTCCTAAGTTTCTGCAGGGGCTTATCTTTGCTCTTGTCCTGAGGAATAAT
CTAATGGTATTTTAACAAATATTTGAAATAAAGACTCTACACAAAGACAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|58760403|gb|AAW82111.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|58760403|gb|AAW82111.1|

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               251-428, gnl|bosTau2|chr12 (19734499-19734323)
               


               
               677-801, gnl|bosTau2|chr12 (19734307-19734183)
               

               
               677-801, gnl|Hg17|chr12 (124065595-124065474)
               

               
               677-801, gnl|Mm7|chr17 (45823410-45823296)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               251-428, gnl|bosTau2|chr12 (19734499-19734323)
               


               
               677-801, gnl|bosTau2|chr12 (19734307-19734183)
               

               
               677-801, gnl|Hg17|chr12 (124065595-124065474)
               

               
               677-801, gnl|Mm7|chr17 (45823410-45823296)

Expressed library(ies): 57 entry(ies)

More info

Expressed library(ies): 57 entry(ies)

Help | Less info


               
               ssp (1.08416)
               

               
               amn (0.835422)
               

               
               ill (0.702371)
               

               
               cje (0.660939)
               

               
               eje (0.494169)
               

               
               cbe (0.478469)
               

               
               pgl (0.473934)
               

               
               bfe (0.449573)
               

               
               fat (0.442282)
               

               
               nca (0.410621)
               

               
               hea (0.408998)
               

               
               che (0.408942)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               eru (0.360144)
               

               
               fty (0.351679)
               

               
               fbs (0.350693)
               

               
               duo (0.345602)
               

               
               eye (0.341006)
               

               
               nje (0.33184)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               ski (0.29347)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               nmm (0.265604)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               eep (0.245128)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 57 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (1.08416)
               

               
               amn (0.835422)
               

               
               ill (0.702371)
               

               
               cje (0.660939)
               

               
               eje (0.494169)
               

               
               cbe (0.478469)
               

               
               pgl (0.473934)
               

               
               bfe (0.449573)
               

               
               fat (0.442282)
               

               
               nca (0.410621)
               

               
               hea (0.408998)
               

               
               che (0.408942)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               eru (0.360144)
               

               
               fty (0.351679)
               

               
               fbs (0.350693)
               

               
               duo (0.345602)
               

               
               eye (0.341006)
               

               
               nje (0.33184)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               ski (0.29347)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               nmm (0.265604)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               eep (0.245128)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	251-428, gnl\|bosTau2\|chr12 (19734499-19734323)

	677-801, gnl\|bosTau2\|chr12 (19734307-19734183)
	677-801, gnl\|Hg17\|chr12 (124065595-124065474)
	677-801, gnl\|Mm7\|chr17 (45823410-45823296)

	ssp (1.08416)
	amn (0.835422)
	ill (0.702371)
	cje (0.660939)
	eje (0.494169)
	cbe (0.478469)
	pgl (0.473934)
	bfe (0.449573)
	fat (0.442282)
	nca (0.410621)
	hea (0.408998)
	che (0.408942)
	elu (0.385356)
	nlu (0.383362)
	eru (0.360144)
	fty (0.351679)
	fbs (0.350693)
	duo (0.345602)
	eye (0.341006)
	nje (0.33184)
	mga (0.32041)
	sme (0.305437)
	cag (0.302389)
	ski (0.29347)
	cst (0.280073)
	fce (0.271592)
	ste (0.270416)
	nmm (0.265604)
	ova (0.258264)
	sug (0.254582)
	eep (0.245128)
	pan (0.23596)
	mgp (0.230681)
	ecc (0.23007)
	nms (0.213858)
	mas (0.210305)
	nbm (0.198649)
	jej (0.197844)
	fcc (0.197785)
	nep (0.183925)
	sag (0.182715)
	sto (0.179824)
	sin (0.174948)
	rec (0.17307)
	fhi (0.169578)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	eli (0.151814)
	lin (0.145603)
	pty (0.142714)
	lnt (0.142308)
	csk (0.140746)
	hlv (0.139256)
	cov (0.132153)
	thg (0.126791)
	spc (0.113366)