Non-Coding RNA Search

Ss1.1-rjej40b_i17.5

Sequence:


               
               CACACAGGCACATCAGGGAGACCTGGCTGAGTATATTCCAGGAGTCTTCTAAGGGGACCA
GTTACCAGACCCAACTGGTGTACTTCTCAGACCAAAAAGCAGTACAGTTTGAAACCTAGC
TCTTCAAGAGAGGACCTCTTGGAGCCTCAATTTTCCCAGCTGTGTAATGGGGATAATAAT
AATGCCCCTCTGGTTATGAGGATTAAATGAGTTAACACACATCAAGGGCTTAGAACGGTG
CTGGGGTTGGGCGTGCAGTCCACGCTTGATCCATGTTATAGGTTATTATCTTACCCTCGC
CTTAGCCCAGAAACAAAGCAGTACACAGATTTGAGACTTCCCAGGACCGGCTTTAATTTC
ACAGAACTGGTTGGGGTCTCTTCCCACATCAGTGAAAAGGGATACTAGGCTTTGACCTCT
GGGAATTCAACACTGGGCCTGGTCCAATCACATTCCAGCCACCAGGTCCTGGCATTTCAT
CACAGGAGCCCATCCCAGACTCCCCCCATCGGCCATAAGTGAAGGGGATGGAGGGTGGAG
GTAAACTTGCCCAGGACAGGATTCCTTCTCTCCAAAGTCCCTCTCTAGGGAAGCCGGCTG
TGTCTTTAAGGAGAGTTGGTCCAGCCACCAGGCTCAGTTTGGACACCAGCTCACCACTCC
ATCCCTGGGGGTCAGCGCCCCGGCCCTGGTGGCCGCTCCAGTGCCTGTGTGCCTACCAGC
ACGTCCATGAGGTAGTCCAGCTCGGCCTCGTCCAGCTCTGGAGCTTCCTCCTTGCCTGGC
CCACCCTCCGGGCTGGATTTGTGGCCCTCAGAGGCTGGTGCCCAAAGTTCACTGTCATAC
ATGGAGGTGTCAATGTCCTCAAACAGGCCCTCAAGCCCATCGTCCAGCAGACAGCCAGTG
GCCGGGCCCAGTAGGTCCAAGGCACCCAGGCTGGGTGGGGCTCCCCCAGTGGGGCGGCCT
GGTGGCCCCTCATCTACCAGGGGCTGGGGGGCCTGACTCAGGCCCTCAATATGGCTGAGG
TCCTCCAGGAGGCTGGCCATGGAGGCCGAGAGGGCGGCGTCCGAGCTGGTCAGCAGGTTG
TCCACCACACCAGGGGATGTAGGCGGGGTGGGCACAGGTGGCAGAGCAGCCGCGGGTGCC
ATGGACGCCTGGATTCGCCGTAGCGTGTTCACAACCAGCACCAGGTGCCGCAGGTCCGGC
TCACTCTGCCGCAGGCTGTGATGGAGCTTGAGCACCGAAAGGTCGAAGAGGGAACTGGAG
GCCACCGACTGGGGTGCCTGTGCCACTGCTGGGTGGCCAGAATCCAGCCACCAGGCGTCA
ACTGCCAGGGCTTCCTTCTCCTCCTCCTCCTCCTCCTCCCGCTTTCGCTTCAGGCCCTTG
CTCAGCATCATCCAGCTCACAAACTGCCAATCAGGACGAAGAGGGAGCCACCCGCAGCCA
ATCAGGAAGCGGTGGCGGCAGCATTGCTCGCTCACTCTCCTCCAGCAACCGGAGCCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACACAGGCACATCAGGGAGACCTGGCTGAGTATATTCCAGGAGTCTTCTAAGGGGACCA
GTTACCAGACCCAACTGGTGTACTTCTCAGACCAAAAAGCAGTACAGTTTGAAACCTAGC
TCTTCAAGAGAGGACCTCTTGGAGCCTCAATTTTCCCAGCTGTGTAATGGGGATAATAAT
AATGCCCCTCTGGTTATGAGGATTAAATGAGTTAACACACATCAAGGGCTTAGAACGGTG
CTGGGGTTGGGCGTGCAGTCCACGCTTGATCCATGTTATAGGTTATTATCTTACCCTCGC
CTTAGCCCAGAAACAAAGCAGTACACAGATTTGAGACTTCCCAGGACCGGCTTTAATTTC
ACAGAACTGGTTGGGGTCTCTTCCCACATCAGTGAAAAGGGATACTAGGCTTTGACCTCT
GGGAATTCAACACTGGGCCTGGTCCAATCACATTCCAGCCACCAGGTCCTGGCATTTCAT
CACAGGAGCCCATCCCAGACTCCCCCCATCGGCCATAAGTGAAGGGGATGGAGGGTGGAG
GTAAACTTGCCCAGGACAGGATTCCTTCTCTCCAAAGTCCCTCTCTAGGGAAGCCGGCTG
TGTCTTTAAGGAGAGTTGGTCCAGCCACCAGGCTCAGTTTGGACACCAGCTCACCACTCC
ATCCCTGGGGGTCAGCGCCCCGGCCCTGGTGGCCGCTCCAGTGCCTGTGTGCCTACCAGC
ACGTCCATGAGGTAGTCCAGCTCGGCCTCGTCCAGCTCTGGAGCTTCCTCCTTGCCTGGC
CCACCCTCCGGGCTGGATTTGTGGCCCTCAGAGGCTGGTGCCCAAAGTTCACTGTCATAC
ATGGAGGTGTCAATGTCCTCAAACAGGCCCTCAAGCCCATCGTCCAGCAGACAGCCAGTG
GCCGGGCCCAGTAGGTCCAAGGCACCCAGGCTGGGTGGGGCTCCCCCAGTGGGGCGGCCT
GGTGGCCCCTCATCTACCAGGGGCTGGGGGGCCTGACTCAGGCCCTCAATATGGCTGAGG
TCCTCCAGGAGGCTGGCCATGGAGGCCGAGAGGGCGGCGTCCGAGCTGGTCAGCAGGTTG
TCCACCACACCAGGGGATGTAGGCGGGGTGGGCACAGGTGGCAGAGCAGCCGCGGGTGCC
ATGGACGCCTGGATTCGCCGTAGCGTGTTCACAACCAGCACCAGGTGCCGCAGGTCCGGC
TCACTCTGCCGCAGGCTGTGATGGAGCTTGAGCACCGAAAGGTCGAAGAGGGAACTGGAG
GCCACCGACTGGGGTGCCTGTGCCACTGCTGGGTGGCCAGAATCCAGCCACCAGGCGTCA
ACTGCCAGGGCTTCCTTCTCCTCCTCCTCCTCCTCCTCCCGCTTTCGCTTCAGGCCCTTG
CTCAGCATCATCCAGCTCACAAACTGCCAATCAGGACGAAGAGGGAGCCACCCGCAGCCA
ATCAGGAAGCGGTGGCGGCAGCATTGCTCGCTCACTCTCCTCCAGCAACCGGAGCCTGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q53GC0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53GC0_HUMAN

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               1-157, - strand, RNAz p=0.813913
               

               
               304-463, - strand, RNAz p=0.990034
               

               
               543-644, - strand, RNAz p=0.604492
               

               
               804-1123, + strand, RNAz p=0.672357

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-157, - strand, RNAz p=0.813913
               

               
               304-463, - strand, RNAz p=0.990034
               

               
               543-644, - strand, RNAz p=0.604492
               

               
               804-1123, + strand, RNAz p=0.672357

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_013376, -
               

               
               5' of NM_013376, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_013376, -
               

               
               5' of NM_013376, -

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1392, gnl|bosTau2|chr18 (41471179-41472560)
               

               
               1-1392, gnl|Hg17|chr19 (45619992-45621297)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1392, gnl|bosTau2|chr18 (41471179-41472560)
               

               
               1-1392, gnl|Hg17|chr19 (45619992-45621297)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               col (0.390016)
               

               
               cga (0.279096)
               

               
               cty (0.20816)
               

               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.390016)
               

               
               cga (0.279096)
               

               
               cty (0.20816)
               

               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	1-157, - strand, RNAz p=0.813913
	304-463, - strand, RNAz p=0.990034
	543-644, - strand, RNAz p=0.604492
	804-1123, + strand, RNAz p=0.672357

	1-1392, gnl\|bosTau2\|chr18 (41471179-41472560)
	1-1392, gnl\|Hg17\|chr19 (45619992-45621297)

	col (0.390016)
	cga (0.279096)
	cty (0.20816)
	jej (0.197844)
	ill (0.175593)
	ton (0.1755)
	csp (0.161186)
	pla (0.133672)
	nmm (0.132802)
	cov (0.132153)
	eep (0.122564)
	jca (0.11396)