Non-Coding RNA Search

Ss1.1-rjej40b_i24.5

Sequence:


               
               GAGGCTACAGCAGAAGGTTGTTCCTTTTTTTTATGCAAGGCTTTTAGTAGAGTTTCTAGA
GCTTTATTTTAGTAGAGTTTCGTTTCTATGCAATGCAGGATCGACAGACCTCTGTGTTCT
CTCTCTCCTGGTACACAGCGTGACACACAGTTGTGAAGCAGTGACGACGCCTGCAGCAGC
TTTTGGGGGGAATGTCACACTGATCTCCTAAATCATAAACACTACGAAATGTCAAAATAA
CGCGAACTGACACAACTTTGCCTTAAAGAGTACTAGACTGGGACTTGTCATGTTACGTTT
AAGAAAGACTTAGAGTGTTCTTTGATGTTTACGATTTTAATATTTCTGAAGGCCACTAGA
GTGGCCTGGGTATGTGCTGAAAGCCAAACTTTTAAATTTCTTGGTTTTTTAAACAAAGAA
CTATTTTAAATAAATCCTATTTCACCACAGTGGAATTGTTGAAAACTGTCTCATAACAAA
AGAAGAAAAGCATATTTAGGGGTTTTTTGTTGTTGTTTTAGTGGGCAGCACTGGGGAATG
AACGTGTCGCTTGTTACCCTTGTAACTATTTTGATAAATATTAGAGGCTAGCATTAAATA
CAACACAAAGTTCATCTTCAGTTTGAAGTACGACATTCAGATTGAGGGAAGTTCAGACAG
TGTGTGGCTGTGTTCCAGTTCCTGCAGGTCTTAGAGAAACTCCCAGCTGGCTCTCAGCTC
AGCGCGCGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCTACAGCAGAAGGTTGTTCCTTTTTTTTATGCAAGGCTTTTAGTAGAGTTTCTAGA
GCTTTATTTTAGTAGAGTTTCGTTTCTATGCAATGCAGGATCGACAGACCTCTGTGTTCT
CTCTCTCCTGGTACACAGCGTGACACACAGTTGTGAAGCAGTGACGACGCCTGCAGCAGC
TTTTGGGGGGAATGTCACACTGATCTCCTAAATCATAAACACTACGAAATGTCAAAATAA
CGCGAACTGACACAACTTTGCCTTAAAGAGTACTAGACTGGGACTTGTCATGTTACGTTT
AAGAAAGACTTAGAGTGTTCTTTGATGTTTACGATTTTAATATTTCTGAAGGCCACTAGA
GTGGCCTGGGTATGTGCTGAAAGCCAAACTTTTAAATTTCTTGGTTTTTTAAACAAAGAA
CTATTTTAAATAAATCCTATTTCACCACAGTGGAATTGTTGAAAACTGTCTCATAACAAA
AGAAGAAAAGCATATTTAGGGGTTTTTTGTTGTTGTTTTAGTGGGCAGCACTGGGGAATG
AACGTGTCGCTTGTTACCCTTGTAACTATTTTGATAAATATTAGAGGCTAGCATTAAATA
CAACACAAAGTTCATCTTCAGTTTGAAGTACGACATTCAGATTGAGGGAAGTTCAGACAG
TGTGTGGCTGTGTTCCAGTTCCTGCAGGTCTTAGAGAAACTCCCAGCTGGCTCTCAGCTC
AGCGCGCGCCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               310-453, + strand, RNAz p=0.914945

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               310-453, + strand, RNAz p=0.914945

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015144, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015144, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-453, gnl|bosTau2|chr3 (29179330-29178886)
               

               
               5-453, gnl|Hg17|chr16 (85999815-85999385)
               

               
               5-453, gnl|Mm7|chr8 (120243158-120242787)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-453, gnl|bosTau2|chr3 (29179330-29178886)
               

               
               5-453, gnl|Hg17|chr16 (85999815-85999385)
               

               
               5-453, gnl|Mm7|chr8 (120243158-120242787)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               elu (0.385356)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               jej (0.0989218)

	5-453, gnl\|bosTau2\|chr3 (29179330-29178886)
	5-453, gnl\|Hg17\|chr16 (85999815-85999385)
	5-453, gnl\|Mm7\|chr8 (120243158-120242787)