Ss1.1-rjej40b_i3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACTCAGAAAAACAGTTGAGGACTATTTCTGCTTTTGCTATGGGAAAGCTTTAGGCAAAT CAACAGTTGTACCTGTTCCATATAAGATGCTACGAGATCAGTCAGCTGTGGTGGTACAGG GGCTTCAGAAGGAGTTGCCTTTAAACATCCTGAGAACTATGATCTTGCTACCCTGAAGTG GATTTTGGAGAACAAGGCAGGGATTTCATTCATCATTAAGAGACCTTTCCTGGAGCCAAA GAAGCACCTAGGTGGTCGTGTGATGGTAACAGATACTGAAAGGTCAATGCTCTCTCCAGG TGGAAGTTGTGGCCCCATCAAAGTGAAAACTGAACCCACAGAAGATTCTGGTATTTCTCT GGAAATGGCAGCTGTGACAGTAAAGGAAGAATCAGAAGATCCTGATTACTATCAATATAA CATTCAAGGAAGCCATCATTCTTCAGAGGGCAATGAAGGAACAGAAATGGAAGTACCAGC AGAAGATTCTACTCAACATGTCCCTTCAGAAACAAGTGAGGACCCCGAAGTTGAGGTGAC TATTGAAGATGATGATTATTCTCCACCTACCAAGAGACCAAAGAGCAATGAACCGCCCCA GCCGCCAGTCACAGAACCTGCCAATGCTGGAAAACGCAAAGTGAGGGAGTTCAACTTCGA GAAATGGAATGCTCGAATTACTGATCTACGTAAACAAGTCGAAGAGCTGTTTGAAAGAAA GTATGCTCAAGCTATAAAAGCCAAAGGTCCTGTGACGATCCCGTACCCTCTTTTCCAGTC CCACGTGGAAGACCTTTACGTGGAAGGACTTCCTGAAGGAATCCCTTTTAGAAGACCATC CACCTACGGGATTCCTCGCCTTGAGAGGATATTACTTGCAAAGGAAAGGATTCGTTTCGT GATTAAGAAACATGAACTTTTGAATTCAACTCGTGAAGACTTACAGCTTGATAAGCCAGC TTCAGGAGTAAAGGAAGAGTGGTATGCCAGAATCACGAAATTACGAAAGATGGTAGATCA ACTTTTCTGCAAAAAATTTGCCGAAGCCTTAGGGAGCACCGAAGCCAAGGCTGTACCTTA CCAGAAATTTGAAGCACATCCCAACGATCTCTACGTGGAAGGACTCCCAGAAAACATTCC TTTTAGAAGTCCCTCGTGGTATGGAATCCCAAGGCTGGAAAAAATCATTCAAGTGGGCAA TCGAATTAAATTTGTTATTAAAAGACCAGAACTTCTGACTCACAGCACTACTGAAGTCAC TCAGCCGAGAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACTCAGAAAAACAGTTGAGGACTATTTCTGCTTTTGCTATGGGAAAGCTTTAGGCAAAT CAACAGTTGTACCTGTTCCATATAAGATGCTACGAGATCAGTCAGCTGTGGTGGTACAGG GGCTTCAGAAGGAGTTGCCTTTAAACATCCTGAGAACTATGATCTTGCTACCCTGAAGTG GATTTTGGAGAACAAGGCAGGGATTTCATTCATCATTAAGAGACCTTTCCTGGAGCCAAA GAAGCACCTAGGTGGTCGTGTGATGGTAACAGATACTGAAAGGTCAATGCTCTCTCCAGG TGGAAGTTGTGGCCCCATCAAAGTGAAAACTGAACCCACAGAAGATTCTGGTATTTCTCT GGAAATGGCAGCTGTGACAGTAAAGGAAGAATCAGAAGATCCTGATTACTATCAATATAA CATTCAAGGAAGCCATCATTCTTCAGAGGGCAATGAAGGAACAGAAATGGAAGTACCAGC AGAAGATTCTACTCAACATGTCCCTTCAGAAACAAGTGAGGACCCCGAAGTTGAGGTGAC TATTGAAGATGATGATTATTCTCCACCTACCAAGAGACCAAAGAGCAATGAACCGCCCCA GCCGCCAGTCACAGAACCTGCCAATGCTGGAAAACGCAAAGTGAGGGAGTTCAACTTCGA GAAATGGAATGCTCGAATTACTGATCTACGTAAACAAGTCGAAGAGCTGTTTGAAAGAAA GTATGCTCAAGCTATAAAAGCCAAAGGTCCTGTGACGATCCCGTACCCTCTTTTCCAGTC CCACGTGGAAGACCTTTACGTGGAAGGACTTCCTGAAGGAATCCCTTTTAGAAGACCATC CACCTACGGGATTCCTCGCCTTGAGAGGATATTACTTGCAAAGGAAAGGATTCGTTTCGT GATTAAGAAACATGAACTTTTGAATTCAACTCGTGAAGACTTACAGCTTGATAAGCCAGC TTCAGGAGTAAAGGAAGAGTGGTATGCCAGAATCACGAAATTACGAAAGATGGTAGATCA ACTTTTCTGCAAAAAATTTGCCGAAGCCTTAGGGAGCACCGAAGCCAAGGCTGTACCTTA CCAGAAATTTGAAGCACATCCCAACGATCTCTACGTGGAAGGACTCCCAGAAAACATTCC TTTTAGAAGTCCCTCGTGGTATGGAATCCCAAGGCTGGAAAAAATCATTCAAGTGGGCAA TCGAATTAAATTTGTTATTAAAAGACCAGAACTTCTGACTCACAGCACTACTGAAGTCAC TCAGCCGAGAAC |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 764-924, + strand, RNAz p=0.947977 | |
| 1040-1198, + strand, RNAz p=0.767678 | |
| 1106-1224, - strand, RNAz p=0.853505 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 764-924, + strand, RNAz p=0.947977 | |
| 1040-1198, + strand, RNAz p=0.767678 | |
| 1106-1224, - strand, RNAz p=0.853505 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 762-888, - strand, RNAmicro p=0.999899 |
| Aligned organism(s): 86 entry(ies) | More info |
| Aligned organism(s): 86 entry(ies) | Help | Less info |
| 42-222, gnl|bosTau2|chr25 (28709270-28709454) | |
| 42-222, gnl|canFam2|chr6 (8807424-8807541) | |
| 42-222, gnl|dasNov1|scaffold_7096 (13410-13527) | |
| 42-222, gnl|echTel1|scaffold_130036 (402-519) | |
| 42-222, gnl|galGal2|chr19 (2460542-2460659) | |
| 42-222, gnl|hg17|chr21 (13745748-13745865) | |
| 42-222, gnl|Hg17|chr7 (73559227-73559411) | |
| 42-222, gnl|loxAfr1|scaffold_19736 (4035-4152) | |
| 42-222, gnl|mm7|chr5 (133536038-133536155) | |
| 42-222, gnl|Mm7|chr5 (133536223-133536039) | |
| 42-222, gnl|monDom2|scaffold_81 (6477535-6477652) | |
| 42-222, gnl|oryCun1|scaffold_82595 (10435-10318) | |
| 42-222, gnl|panTro1|chr17_random (9134996-9134879) | |
| 42-222, gnl|rheMac2|chr3 (34508610-34508494) | |
| 42-222, gnl|rn3|chr12 (23358573-23358456) | |
| 725-924, gnl|bosTau2|chr25 (28736658-28736856) | |
| 725-924, gnl|Hg17|chr7 (73591470-73591679) | |
| 725-924, gnl|Mm7|chr5 (133512948-133512759) | |
| 1040-1224, gnl|bosTau2|chr25 (28744914-28745098) | |
| 1040-1224, gnl|canFam2|chr6 (8754879-8754672) | |
| 1040-1224, gnl|canFam2|chr6 (8754909-8754672) | |
| 1040-1224, gnl|canFam2|chr6 (8754879-8754714) | |
| 1040-1224, gnl|canFam2|chr6 (8754714-8754879) | |
| 1040-1224, gnl|canFam2|chr6 (8754879-8754714) | |
| 1040-1224, gnl|dasNov1|scaffold_28589 (11682-11476) | |
| 1040-1224, gnl|dasNov1|scaffold_28589 (11696-11476) | |
| 1040-1224, gnl|dasNov1|scaffold_28589 (11682-11517) | |
| 1040-1224, gnl|dasNov1|scaffold_28589 (11517-11682) | |
| 1040-1224, gnl|dasNov1|scaffold_28589 (11682-11517) | |
| 1040-1224, gnl|echTel1|scaffold_105395 (3199-3378) | |
| 1040-1224, gnl|echTel1|scaffold_105395 (3185-3378) | |
| 1040-1224, gnl|echTel1|scaffold_105395 (3199-3360) | |
| 1040-1224, gnl|echTel1|scaffold_105395 (3360-3199) | |
| 1040-1224, gnl|echTel1|scaffold_105395 (3199-3360) | |
| 1040-1224, gnl|galGal2|chr19 (2442327-2442167) | |
| 1040-1224, gnl|galGal2|chr19 (2442357-2442167) | |
| 1040-1224, gnl|galGal2|chr19 (2442327-2442170) | |
| 1040-1224, gnl|galGal2|chr19 (2442170-2442327) | |
| 1040-1224, gnl|galGal2|chr19 (2442327-2442170) | |
| 1040-1224, gnl|hg17|chr7 (64697246-64697452) | |
| 1040-1224, gnl|hg17|chr7 (64003177-64003413) | |
| 1040-1224, gnl|hg17|chr7 (72041836-72042001) | |
| 1040-1224, gnl|hg17|chr7 (74069738-74069903) | |
| 1040-1224, gnl|hg17|chr7 (73595523-73595688) | |
| 1040-1224, gnl|Hg17|chr7 (73595492-73595676) | |
| 1040-1224, gnl|loxAfr1|scaffold_7637 (75426-75574) | |
| 1040-1224, gnl|loxAfr1|scaffold_7637 (75426-75574) | |
| 1040-1224, gnl|loxAfr1|scaffold_7637 (75426-75574) | |
| 1040-1224, gnl|loxAfr1|scaffold_7637 (75574-75426) | |
| 1040-1224, gnl|loxAfr1|scaffold_7637 (75426-75574) | |
| 1040-1224, gnl|mm7|chr5 (133505159-133504952) | |
| 1040-1224, gnl|mm7|chr5 (133505189-133504952) | |
| 1040-1224, gnl|mm7|chr5 (133505159-133505000) | |
| 1040-1224, gnl|mm7|chr5 (133504998-133505159) | |
| 1040-1224, gnl|mm7|chr5 (133505159-133505000) | |
| 1040-1224, gnl|Mm7|chr5 (133505188-133505004) | |
| 1040-1224, gnl|monDom2|scaffold_81 (6427875-6427674) | |
| 1040-1224, gnl|monDom2|scaffold_81 (6427905-6427674) | |
| 1040-1224, gnl|monDom2|scaffold_81 (6427875-6427710) | |
| 1040-1224, gnl|monDom2|scaffold_81 (6427710-6427875) | |
| 1040-1224, gnl|monDom2|scaffold_81 (6427875-6427710) | |
| 1040-1224, gnl|oryCun1|scaffold_147021 (3306-3510) | |
| 1040-1224, gnl|oryCun1|scaffold_147021 (3294-3510) | |
| 1040-1224, gnl|oryCun1|scaffold_147021 (3306-3471) | |
| 1040-1224, gnl|oryCun1|scaffold_147021 (3471-3306) | |
| 1040-1224, gnl|oryCun1|scaffold_147021 (3306-3471) | |
| 1040-1224, gnl|panTro1|chr6 (66344218-66344424) | |
| 1040-1224, gnl|panTro1|chr6 (65620732-65620950) | |
| 1040-1224, gnl|panTro1|chr6 (75344435-75344600) | |
| 1040-1224, gnl|panTro1|chr6 (75344600-75344435) | |
| 1040-1224, gnl|panTro1|chr6 (75344435-75344600) | |
| 1040-1224, gnl|rheMac2|chr3 (59247417-59247212) | |
| 1040-1224, gnl|rheMac2|chr3 (59247429-59247212) | |
| 1040-1224, gnl|rheMac2|chr3 (52190050-52190215) | |
| 1040-1224, gnl|rheMac2|chr3 (52190215-52190050) | |
| 1040-1224, gnl|rheMac2|chr3 (52190050-52190215) | |
| 1040-1224, gnl|rn3|chr12 (23390383-23390590) | |
| 1040-1224, gnl|rn3|chr12 (23390371-23390590) | |
| 1040-1224, gnl|rn3|chr12 (23390383-23390542) | |
| 1040-1224, gnl|rn3|chr12 (23390544-23390383) | |
| 1040-1224, gnl|rn3|chr12 (23390383-23390542) | |
| 1040-1224, gnl|xenTro1|scaffold_21 (3005502-3005692) | |
| 1040-1224, gnl|xenTro1|scaffold_21 (3005472-3005692) | |
| 1040-1224, gnl|xenTro1|scaffold_21 (3005502-3005661) | |
| 1040-1224, gnl|xenTro1|scaffold_21 (3005661-3005502) | |
| 1040-1224, gnl|xenTro1|scaffold_21 (3005502-3005661) |
| Aligned organism(s): 86 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-222, gnl|bosTau2|chr25 (28709270-28709454) | |
| 42-222, gnl|canFam2|chr6 (8807424-8807541) | |
| 42-222, gnl|dasNov1|scaffold_7096 (13410-13527) | |
| 42-222, gnl|echTel1|scaffold_130036 (402-519) | |
| 42-222, gnl|galGal2|chr19 (2460542-2460659) | |
| 42-222, gnl|hg17|chr21 (13745748-13745865) | |
| 42-222, gnl|Hg17|chr7 (73559227-73559411) | |
| 42-222, gnl|loxAfr1|scaffold_19736 (4035-4152) | |
| 42-222, gnl|mm7|chr5 (133536038-133536155) | |
| 42-222, gnl|Mm7|chr5 (133536223-133536039) | |
| 42-222, gnl|monDom2|scaffold_81 (6477535-6477652) | |
| 42-222, gnl|oryCun1|scaffold_82595 (10435-10318) | |
| 42-222, gnl|panTro1|chr17_random (9134996-9134879) | |
| 42-222, gnl|rheMac2|chr3 (34508610-34508494) | |
| 42-222, gnl|rn3|chr12 (23358573-23358456) | |
| 725-924, gnl|bosTau2|chr25 (28736658-28736856) | |
| 725-924, gnl|Hg17|chr7 (73591470-73591679) | |
| 725-924, gnl|Mm7|chr5 (133512948-133512759) | |
| 1040-1224, gnl|bosTau2|chr25 (28744914-28745098) | |
| 1040-1224, gnl|canFam2|chr6 (8754879-8754672) | |
| 1040-1224, gnl|canFam2|chr6 (8754909-8754672) | |
| 1040-1224, gnl|canFam2|chr6 (8754879-8754714) | |
| 1040-1224, gnl|canFam2|chr6 (8754714-8754879) | |
| 1040-1224, gnl|canFam2|chr6 (8754879-8754714) | |
| 1040-1224, gnl|dasNov1|scaffold_28589 (11682-11476) | |
| 1040-1224, gnl|dasNov1|scaffold_28589 (11696-11476) | |
| 1040-1224, gnl|dasNov1|scaffold_28589 (11682-11517) | |
| 1040-1224, gnl|dasNov1|scaffold_28589 (11517-11682) | |
| 1040-1224, gnl|dasNov1|scaffold_28589 (11682-11517) | |
| 1040-1224, gnl|echTel1|scaffold_105395 (3199-3378) | |
| 1040-1224, gnl|echTel1|scaffold_105395 (3185-3378) | |
| 1040-1224, gnl|echTel1|scaffold_105395 (3199-3360) | |
| 1040-1224, gnl|echTel1|scaffold_105395 (3360-3199) | |
| 1040-1224, gnl|echTel1|scaffold_105395 (3199-3360) | |
| 1040-1224, gnl|galGal2|chr19 (2442327-2442167) | |
| 1040-1224, gnl|galGal2|chr19 (2442357-2442167) | |
| 1040-1224, gnl|galGal2|chr19 (2442327-2442170) | |
| 1040-1224, gnl|galGal2|chr19 (2442170-2442327) | |
| 1040-1224, gnl|galGal2|chr19 (2442327-2442170) | |
| 1040-1224, gnl|hg17|chr7 (64697246-64697452) | |
| 1040-1224, gnl|hg17|chr7 (64003177-64003413) | |
| 1040-1224, gnl|hg17|chr7 (72041836-72042001) | |
| 1040-1224, gnl|hg17|chr7 (74069738-74069903) | |
| 1040-1224, gnl|hg17|chr7 (73595523-73595688) | |
| 1040-1224, gnl|Hg17|chr7 (73595492-73595676) | |
| 1040-1224, gnl|loxAfr1|scaffold_7637 (75426-75574) | |
| 1040-1224, gnl|loxAfr1|scaffold_7637 (75426-75574) | |
| 1040-1224, gnl|loxAfr1|scaffold_7637 (75426-75574) | |
| 1040-1224, gnl|loxAfr1|scaffold_7637 (75574-75426) | |
| 1040-1224, gnl|loxAfr1|scaffold_7637 (75426-75574) | |
| 1040-1224, gnl|mm7|chr5 (133505159-133504952) | |
| 1040-1224, gnl|mm7|chr5 (133505189-133504952) | |
| 1040-1224, gnl|mm7|chr5 (133505159-133505000) | |
| 1040-1224, gnl|mm7|chr5 (133504998-133505159) | |
| 1040-1224, gnl|mm7|chr5 (133505159-133505000) | |
| 1040-1224, gnl|Mm7|chr5 (133505188-133505004) | |
| 1040-1224, gnl|monDom2|scaffold_81 (6427875-6427674) | |
| 1040-1224, gnl|monDom2|scaffold_81 (6427905-6427674) | |
| 1040-1224, gnl|monDom2|scaffold_81 (6427875-6427710) | |
| 1040-1224, gnl|monDom2|scaffold_81 (6427710-6427875) | |
| 1040-1224, gnl|monDom2|scaffold_81 (6427875-6427710) | |
| 1040-1224, gnl|oryCun1|scaffold_147021 (3306-3510) | |
| 1040-1224, gnl|oryCun1|scaffold_147021 (3294-3510) | |
| 1040-1224, gnl|oryCun1|scaffold_147021 (3306-3471) | |
| 1040-1224, gnl|oryCun1|scaffold_147021 (3471-3306) | |
| 1040-1224, gnl|oryCun1|scaffold_147021 (3306-3471) | |
| 1040-1224, gnl|panTro1|chr6 (66344218-66344424) | |
| 1040-1224, gnl|panTro1|chr6 (65620732-65620950) | |
| 1040-1224, gnl|panTro1|chr6 (75344435-75344600) | |
| 1040-1224, gnl|panTro1|chr6 (75344600-75344435) | |
| 1040-1224, gnl|panTro1|chr6 (75344435-75344600) | |
| 1040-1224, gnl|rheMac2|chr3 (59247417-59247212) | |
| 1040-1224, gnl|rheMac2|chr3 (59247429-59247212) | |
| 1040-1224, gnl|rheMac2|chr3 (52190050-52190215) | |
| 1040-1224, gnl|rheMac2|chr3 (52190215-52190050) | |
| 1040-1224, gnl|rheMac2|chr3 (52190050-52190215) | |
| 1040-1224, gnl|rn3|chr12 (23390383-23390590) | |
| 1040-1224, gnl|rn3|chr12 (23390371-23390590) | |
| 1040-1224, gnl|rn3|chr12 (23390383-23390542) | |
| 1040-1224, gnl|rn3|chr12 (23390544-23390383) | |
| 1040-1224, gnl|rn3|chr12 (23390383-23390542) | |
| 1040-1224, gnl|xenTro1|scaffold_21 (3005502-3005692) | |
| 1040-1224, gnl|xenTro1|scaffold_21 (3005472-3005692) | |
| 1040-1224, gnl|xenTro1|scaffold_21 (3005502-3005661) | |
| 1040-1224, gnl|xenTro1|scaffold_21 (3005661-3005502) | |
| 1040-1224, gnl|xenTro1|scaffold_21 (3005502-3005661) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cbl (0.344392) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jej (0.0989218) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.344392) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jej (0.0989218) |