Non-Coding RNA Search

Ss1.1-rlin03_e16.5

Sequence:


               
               CTATGTCACAGCTGAGGCAATGCTGTATCCTAAACCCACTGTGCTGGGCACAGATCAAAC
CTGCGCTCCAGAGATGCCAATGATCTTCCTGCGCCACAGCAGGAACTCCCCAGCCGTACT
TAGTATCACTGAAGCCATTCTCACAACATTACCTCTCACTGCAATCACTGTATGTAAATT
AAATGAAGCAAATACTGAAACTTTACCATATAAAAATAAGCAACCAAGATCTGTTTCTGA
TTTTAATAATTTTGAGTGATTTACATTCAAACACTAGGAGTAAGGATGTGTTGGAATGCC
AGAGCTTCAAAATGAAGACAGTTCTGTAAGACAAAAAAGAAACTATTAGAACAAAGCTGA
ATTAGAAGCTTATGTGCTTTAGTTAACTTTGAAGAATAATTGACTTCATCTGTGGCAGAA
ACAAATCAGTATCTGTAAATACTAGTCTTTTACTGCTACTTTTAGCACACCCTTTTTTTT
CCTGTCCGTGGACCCCATAATTGGAAATCTAAGTATGTCCAGGCTATCTCCATTTTTTTC
TTTTTAACTGATAACCACCACCTGAGAAGGGCCATACCAAATGGTGTTGTCTGTTTTCTT
TTCTCCCTATCCTAAAGGCCTCTTGCCTAATTGATTGAATTGCAACATAAAGGTTAAGAA
AGTTCACCTTCAGTTATGACTTACTGATTCAGACTTGCTAGGATGGCACCGAGTGGTGGA
TGGTATTAAAAAAAGGAGGCAAGGGTTTTGACCCTGTTTCCTTGTGAGGTAATTAGACAG
TGGCCCCTTGAGCAATCTGTGTGTTAGAGTTGCCAACCTTCCACACAGTCAGAAAGCCAT
AATAACTTTACAGTCTGCCCTCTGTATCTGCTGTTTTGTATCCTCAGATTCAACCAACCA
TGGATTGTGTAGTACTGTGATATGTATTTGAACCCTCACAGTTCAAACTCATGCTGTTCA
AGGGTTAACTAGTTTTGGCTGCACTCTCAGTTCAAAGATATATTAGAGACCTCAGCGTAG
AATTGGAAAGAGCAAGTTGCTCTCTGGATCAGGCTTCTCAGACTTCAAGTGCTTTGAATC
TCTACCTTGGAGTCTTAATAAAATGCAGATTTTCATGGTGATGGTAGCCAGAGGTTGGCA
GCTGTCAGAAATGGAGAGTTGTTAAATGGATATCCC------------------------
------------------------------------------------------------
------------TTATGAGAGGTTTATTTTACCACAATTAAAAAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATGTCACAGCTGAGGCAATGCTGTATCCTAAACCCACTGTGCTGGGCACAGATCAAAC
CTGCGCTCCAGAGATGCCAATGATCTTCCTGCGCCACAGCAGGAACTCCCCAGCCGTACT
TAGTATCACTGAAGCCATTCTCACAACATTACCTCTCACTGCAATCACTGTATGTAAATT
AAATGAAGCAAATACTGAAACTTTACCATATAAAAATAAGCAACCAAGATCTGTTTCTGA
TTTTAATAATTTTGAGTGATTTACATTCAAACACTAGGAGTAAGGATGTGTTGGAATGCC
AGAGCTTCAAAATGAAGACAGTTCTGTAAGACAAAAAAGAAACTATTAGAACAAAGCTGA
ATTAGAAGCTTATGTGCTTTAGTTAACTTTGAAGAATAATTGACTTCATCTGTGGCAGAA
ACAAATCAGTATCTGTAAATACTAGTCTTTTACTGCTACTTTTAGCACACCCTTTTTTTT
CCTGTCCGTGGACCCCATAATTGGAAATCTAAGTATGTCCAGGCTATCTCCATTTTTTTC
TTTTTAACTGATAACCACCACCTGAGAAGGGCCATACCAAATGGTGTTGTCTGTTTTCTT
TTCTCCCTATCCTAAAGGCCTCTTGCCTAATTGATTGAATTGCAACATAAAGGTTAAGAA
AGTTCACCTTCAGTTATGACTTACTGATTCAGACTTGCTAGGATGGCACCGAGTGGTGGA
TGGTATTAAAAAAAGGAGGCAAGGGTTTTGACCCTGTTTCCTTGTGAGGTAATTAGACAG
TGGCCCCTTGAGCAATCTGTGTGTTAGAGTTGCCAACCTTCCACACAGTCAGAAAGCCAT
AATAACTTTACAGTCTGCCCTCTGTATCTGCTGTTTTGTATCCTCAGATTCAACCAACCA
TGGATTGTGTAGTACTGTGATATGTATTTGAACCCTCACAGTTCAAACTCATGCTGTTCA
AGGGTTAACTAGTTTTGGCTGCACTCTCAGTTCAAAGATATATTAGAGACCTCAGCGTAG
AATTGGAAAGAGCAAGTTGCTCTCTGGATCAGGCTTCTCAGACTTCAAGTGCTTTGAATC
TCTACCTTGGAGTCTTAATAAAATGCAGATTTTCATGGTGATGGTAGCCAGAGGTTGGCA
GCTGTCAGAAATGGAGAGTTGTTAAATGGATATCCC------------------------
------------------------------------------------------------
------------TTATGAGAGGTTTATTTTACCACAATTAAAAAATTT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               114-914, gnl|bosTau2|chr4 (4202583-4203380)
               

               
               114-914, gnl|Hg17|chr7 (91811354-91812461)
               


               
               929-1173, gnl|bosTau2|chr4 (4203416-4203652)
               

               
               929-1173, gnl|Hg17|chr7 (91812508-91812748)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-914, gnl|bosTau2|chr4 (4202583-4203380)
               

               
               114-914, gnl|Hg17|chr7 (91811354-91812461)
               


               
               929-1173, gnl|bosTau2|chr4 (4203416-4203652)
               

               
               929-1173, gnl|Hg17|chr7 (91812508-91812748)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               ecc (0.115035)

	114-914, gnl\|bosTau2\|chr4 (4202583-4203380)
	114-914, gnl\|Hg17\|chr7 (91811354-91812461)

	929-1173, gnl\|bosTau2\|chr4 (4203416-4203652)
	929-1173, gnl\|Hg17\|chr7 (91812508-91812748)