Non-Coding RNA Search

Ss1.1-rlin03_f11.5

Sequence:


               
               TTTGTTTTTTTTTTTAAATATGAGTTGCCTATATTTGCTATTCAAAATTTTGTAAATACG
CAAATCAGCTTTATAGGTTTATTACACGTTTTCTAAGAGTCTTTGGGAAAAAAAATCATA
ATTCTTTTGAAAATAACCATGAGTACATTTACAGTTAGAATTTGTGGTGAGATACAGCTT
AAAACCTTACCAAATTCATTTCTCTAGGGTGAAGAGAGAATAATCATTCAAATGGACTTC
AGAAACCGATTTCATGCACTGATTGAAATGGGATTGTTTATTTTAAATATGACCGACATT
TTGTATGAATTGTGAACTCAAGAGCTTAAAGATAGTTACACCACACAAAAGTGAAACCTT
ATAGTAAGCTAAAGAGTGTCATTTTTAAAAAGAAGGACTTAGGTAGTTTTCACATACATG
GCAATGTTGAATTTATGATGCAGTTTTCAGACACGGAAACGCTGAATTTATGATGCAGTT
TTCTTGTGCAGTACCGTTGGTTAGATGCCAATTTATGTGGACTTTGCATGTAATATACAG
TGAGACACAGTAATTTTACCTAAATTACAGTGCAGTTTAGTTAATCTCTTGTTAATACTG
ACTCAGTGTCTGCCTTTAATTATAAATGACATGTTGAAAACTTAAGGAAGCAAGTGCTAC
ATATATGCAATATAAAATAGTAATGTGATGCTCATGCTGTTAACCAAAGGGCAGAATAAA
TAAGCAAAATGCCAAAAGGGGTCTTAAATGAATGAAAATTTAATTTTGTTTTTAAAATAT
TGTTTATCTTTATTTATTTTGTGGTAATATAGTAAATTTTTTTAGAAAATTTTCATAACT
TGATAAATTATAGTTTTGTTTGTTAGAAAAGTTGCTCTTAAAAAACATGTGTAAATAGAT
GACAACGGTGTAAATATTTTGTAAGAGGCTTCAAAATGTTTATACGTGGAAACATACCTA
CATGAAAAGCATAAATTGGTTGCTGTTTTGCTTCTTTTTCCCTCTTATTTTTGTATTGTG
GTCATTTCCTATGCAAATAATGGAGCAAACAGCTGTATAGTTGTAGAATTTTTTGAGAGA
ATGAGATGTTTATATATATAAATGACAATTTTTTTTGGAAAATAAAAAGTGCCTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTTTTTTTTTTTAAATATGAGTTGCCTATATTTGCTATTCAAAATTTTGTAAATACG
CAAATCAGCTTTATAGGTTTATTACACGTTTTCTAAGAGTCTTTGGGAAAAAAAATCATA
ATTCTTTTGAAAATAACCATGAGTACATTTACAGTTAGAATTTGTGGTGAGATACAGCTT
AAAACCTTACCAAATTCATTTCTCTAGGGTGAAGAGAGAATAATCATTCAAATGGACTTC
AGAAACCGATTTCATGCACTGATTGAAATGGGATTGTTTATTTTAAATATGACCGACATT
TTGTATGAATTGTGAACTCAAGAGCTTAAAGATAGTTACACCACACAAAAGTGAAACCTT
ATAGTAAGCTAAAGAGTGTCATTTTTAAAAAGAAGGACTTAGGTAGTTTTCACATACATG
GCAATGTTGAATTTATGATGCAGTTTTCAGACACGGAAACGCTGAATTTATGATGCAGTT
TTCTTGTGCAGTACCGTTGGTTAGATGCCAATTTATGTGGACTTTGCATGTAATATACAG
TGAGACACAGTAATTTTACCTAAATTACAGTGCAGTTTAGTTAATCTCTTGTTAATACTG
ACTCAGTGTCTGCCTTTAATTATAAATGACATGTTGAAAACTTAAGGAAGCAAGTGCTAC
ATATATGCAATATAAAATAGTAATGTGATGCTCATGCTGTTAACCAAAGGGCAGAATAAA
TAAGCAAAATGCCAAAAGGGGTCTTAAATGAATGAAAATTTAATTTTGTTTTTAAAATAT
TGTTTATCTTTATTTATTTTGTGGTAATATAGTAAATTTTTTTAGAAAATTTTCATAACT
TGATAAATTATAGTTTTGTTTGTTAGAAAAGTTGCTCTTAAAAAACATGTGTAAATAGAT
GACAACGGTGTAAATATTTTGTAAGAGGCTTCAAAATGTTTATACGTGGAAACATACCTA
CATGAAAAGCATAAATTGGTTGCTGTTTTGCTTCTTTTTCCCTCTTATTTTTGTATTGTG
GTCATTTCCTATGCAAATAATGGAGCAAACAGCTGTATAGTTGTAGAATTTTTTGAGAGA
ATGAGATGTTTATATATATAAATGACAATTTTTTTTGGAAAATAAAAAGTGCCTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1138, gnl|bosTau2|chr20 (15475664-15476816)
               

               
               1-1138, gnl|Hg17|chr13 (72548522-72549675)
               

               
               1-1138, gnl|Mm7|chr14 (93715272-93716438)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1138, gnl|bosTau2|chr20 (15475664-15476816)
               

               
               1-1138, gnl|Hg17|chr13 (72548522-72549675)
               

               
               1-1138, gnl|Mm7|chr14 (93715272-93716438)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               lin (1.60163)
               

               
               tra (1.23092)
               

               
               rec (0.865351)
               

               
               sin (0.69979)
               

               
               ret (0.643666)
               

               
               pro (0.512033)
               

               
               liv (0.438853)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               bfe (0.149858)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (1.60163)
               

               
               tra (1.23092)
               

               
               rec (0.865351)
               

               
               sin (0.69979)
               

               
               ret (0.643666)
               

               
               pro (0.512033)
               

               
               liv (0.438853)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               bfe (0.149858)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	1-1138, gnl\|bosTau2\|chr20 (15475664-15476816)
	1-1138, gnl\|Hg17\|chr13 (72548522-72549675)
	1-1138, gnl\|Mm7\|chr14 (93715272-93716438)

	lin (1.60163)
	tra (1.23092)
	rec (0.865351)
	sin (0.69979)
	ret (0.643666)
	pro (0.512033)
	liv (0.438853)
	eje (0.197668)
	col (0.195008)
	ill (0.175593)
	bfe (0.149858)
	bla (0.124347)
	spc (0.113366)
	jej (0.0989218)