Ss1.1-rlin03_g5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGCGTCACTACGGCTGTAACATCGTCCGAACTGAATATTACAAGGAGCTGGCAGCCAG AATTGTTGTAGCTGCAGTGGCAAGAGCTGCAGCTCGATGTAACAAAGGCATAGAGGTGCT ATTTGCAGTGGCTCTGGAACATTTTGTGTTGGTTGTTGTGAGAGTTTTGAGGGGACCTAC TTCTGCAGATGAAACAGCCAAGAAGATTCAGTACCTAATCCATTGTCAGTGGTGTGAAGA GAGAATTTTTCAGAAGGATGGTAATATGGTAGAAGAAAACCCATATAAACAGCTACCGTG TAACTGTTACGGCAGCATGCCTGGAAAGACAGCAATAGAACTTGGACCTCTATGGTCGAG TTCCCTTTTCAATACTGGATTCCTCAAAAGAATGCTATTTGAATCTCTTCACCATGGTTT AGATGACATTCAGACCCTAATAAAGACATTAATCTTTGAGTCAGAGTGCACTCCTCAAAA AGAATGTGGAGTACTTAAAACTACAGATGATACCACAACAGAAAACCATGTTGCACAAGG AAAGAGAAAAAGTAATGAAGCAATCACAAATTTAGCCAAGAAGCAAAAGACCGATGTCAG TACTGAACATCCTCCCTTCTATTATAACATCCACAGACACAGCATTAAAGGAATGAATAT GCCAAAGTTAAAAAAGTTTTTGTGCTATCTTTCTCAAGCAGGCTTTCGAGTAAGCCGAAC TCATTTTGACCCAATGGGTGTTCGTACAGATGCACCTCTAATGCAGTTTAAATCTATCCT TTTAAAGTACAGCACTCCCACTTACACCGGAGGACAGTCGGAGGGCCATGTTCAATCAGC AGCTGAAGATACAGTAGCTAACAGGGTTGAAATGTCAGTGAATGACAAAGCAGAAGCAAG TGGTTGCAGAAGATGGTAAATGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGCGTCACTACGGCTGTAACATCGTCCGAACTGAATATTACAAGGAGCTGGCAGCCAG AATTGTTGTAGCTGCAGTGGCAAGAGCTGCAGCTCGATGTAACAAAGGCATAGAGGTGCT ATTTGCAGTGGCTCTGGAACATTTTGTGTTGGTTGTTGTGAGAGTTTTGAGGGGACCTAC TTCTGCAGATGAAACAGCCAAGAAGATTCAGTACCTAATCCATTGTCAGTGGTGTGAAGA GAGAATTTTTCAGAAGGATGGTAATATGGTAGAAGAAAACCCATATAAACAGCTACCGTG TAACTGTTACGGCAGCATGCCTGGAAAGACAGCAATAGAACTTGGACCTCTATGGTCGAG TTCCCTTTTCAATACTGGATTCCTCAAAAGAATGCTATTTGAATCTCTTCACCATGGTTT AGATGACATTCAGACCCTAATAAAGACATTAATCTTTGAGTCAGAGTGCACTCCTCAAAA AGAATGTGGAGTACTTAAAACTACAGATGATACCACAACAGAAAACCATGTTGCACAAGG AAAGAGAAAAAGTAATGAAGCAATCACAAATTTAGCCAAGAAGCAAAAGACCGATGTCAG TACTGAACATCCTCCCTTCTATTATAACATCCACAGACACAGCATTAAAGGAATGAATAT GCCAAAGTTAAAAAAGTTTTTGTGCTATCTTTCTCAAGCAGGCTTTCGAGTAAGCCGAAC TCATTTTGACCCAATGGGTGTTCGTACAGATGCACCTCTAATGCAGTTTAAATCTATCCT TTTAAAGTACAGCACTCCCACTTACACCGGAGGACAGTCGGAGGGCCATGTTCAATCAGC AGCTGAAGATACAGTAGCTAACAGGGTTGAAATGTCAGTGAATGACAAAGCAGAAGCAAG TGGTTGCAGAAGATGGTAAATGTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 366-477, + strand, RNAz p=0.954607 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 366-477, + strand, RNAz p=0.954607 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK131460, + |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 83-275, gnl|bosTau2|chr16 (48610652-48610844) | |
| 83-275, gnl|canFam2|chr7 (21273885-21274097) | |
| 83-275, gnl|danRer3|chr20 (43017751-43017541) | |
| 83-275, gnl|echTel1|scaffold_322381 (3416-3207) | |
| 83-275, gnl|fr1|chrUn (272560354-272560155) | |
| 83-275, gnl|galGal2|chrUn (5430651-5430857) | |
| 83-275, gnl|hg17|chr1 (181838383-181838593) | |
| 83-275, gnl|Hg17|chr1 (181838587-181838395) | |
| 83-275, gnl|loxAfr1|scaffold_66487 (5984-6192) | |
| 83-275, gnl|mm7|chr1 (151385345-151385141) | |
| 83-275, gnl|Mm7|chr1 (151385140-151385332) | |
| 83-275, gnl|monDom2|scaffold_16 (39326866-39327076) | |
| 83-275, gnl|oryCun1|scaffold_204999 (93916-94123) | |
| 83-275, gnl|panTro1|chr1 (164405280-164405480) | |
| 83-275, gnl|rheMac2|chr1 (185555386-185555176) | |
| 83-275, gnl|rn3|chr13 (66338768-66338563) | |
| 83-275, gnl|tetNig1|chrUn_random (117767530-117767331) | |
| 83-275, gnl|xenTro1|scaffold_81 (636714-636519) | |
| 354-477, gnl|bosTau2|chr16 (48620029-48620152) | |
| 354-477, gnl|canFam2|chr7 (21260942-21261083) | |
| 354-477, gnl|danRer3|chr20 (43019125-43018982) | |
| 354-477, gnl|dasNov1|scaffold_20691 (7584-7730) | |
| 354-477, gnl|fr1|chrUn (272560975-272560842) | |
| 354-477, gnl|galGal2|chrUn (5428349-5428493) | |
| 354-477, gnl|hg17|chr1 (181825773-181825916) | |
| 354-477, gnl|Hg17|chr1 (181825900-181825771) | |
| 354-477, gnl|mm7|chr1 (151387107-151386969) | |
| 354-477, gnl|Mm7|chr1 (151386978-151387107) | |
| 354-477, gnl|monDom2|scaffold_16 (39319149-39319295) | |
| 354-477, gnl|oryCun1|scaffold_204999 (85272-85419) | |
| 354-477, gnl|panTro1|chr1 (164392671-164392814) | |
| 354-477, gnl|rheMac2|chr1 (185567995-185567852) | |
| 354-477, gnl|rn3|chr13 (66344126-66343992) | |
| 354-477, gnl|tetNig1|chrUn_random (117767889-117767765) | |
| 667-924, gnl|bosTau2|chr16 (48623347-48623604) | |
| 667-924, gnl|Hg17|chr1 (181821060-181820803) | |
| 667-924, gnl|Mm7|chr1 (151390776-151391033) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 83-275, gnl|bosTau2|chr16 (48610652-48610844) | |
| 83-275, gnl|canFam2|chr7 (21273885-21274097) | |
| 83-275, gnl|danRer3|chr20 (43017751-43017541) | |
| 83-275, gnl|echTel1|scaffold_322381 (3416-3207) | |
| 83-275, gnl|fr1|chrUn (272560354-272560155) | |
| 83-275, gnl|galGal2|chrUn (5430651-5430857) | |
| 83-275, gnl|hg17|chr1 (181838383-181838593) | |
| 83-275, gnl|Hg17|chr1 (181838587-181838395) | |
| 83-275, gnl|loxAfr1|scaffold_66487 (5984-6192) | |
| 83-275, gnl|mm7|chr1 (151385345-151385141) | |
| 83-275, gnl|Mm7|chr1 (151385140-151385332) | |
| 83-275, gnl|monDom2|scaffold_16 (39326866-39327076) | |
| 83-275, gnl|oryCun1|scaffold_204999 (93916-94123) | |
| 83-275, gnl|panTro1|chr1 (164405280-164405480) | |
| 83-275, gnl|rheMac2|chr1 (185555386-185555176) | |
| 83-275, gnl|rn3|chr13 (66338768-66338563) | |
| 83-275, gnl|tetNig1|chrUn_random (117767530-117767331) | |
| 83-275, gnl|xenTro1|scaffold_81 (636714-636519) | |
| 354-477, gnl|bosTau2|chr16 (48620029-48620152) | |
| 354-477, gnl|canFam2|chr7 (21260942-21261083) | |
| 354-477, gnl|danRer3|chr20 (43019125-43018982) | |
| 354-477, gnl|dasNov1|scaffold_20691 (7584-7730) | |
| 354-477, gnl|fr1|chrUn (272560975-272560842) | |
| 354-477, gnl|galGal2|chrUn (5428349-5428493) | |
| 354-477, gnl|hg17|chr1 (181825773-181825916) | |
| 354-477, gnl|Hg17|chr1 (181825900-181825771) | |
| 354-477, gnl|mm7|chr1 (151387107-151386969) | |
| 354-477, gnl|Mm7|chr1 (151386978-151387107) | |
| 354-477, gnl|monDom2|scaffold_16 (39319149-39319295) | |
| 354-477, gnl|oryCun1|scaffold_204999 (85272-85419) | |
| 354-477, gnl|panTro1|chr1 (164392671-164392814) | |
| 354-477, gnl|rheMac2|chr1 (185567995-185567852) | |
| 354-477, gnl|rn3|chr13 (66344126-66343992) | |
| 354-477, gnl|tetNig1|chrUn_random (117767889-117767765) | |
| 667-924, gnl|bosTau2|chr16 (48623347-48623604) | |
| 667-924, gnl|Hg17|chr1 (181821060-181820803) | |
| 667-924, gnl|Mm7|chr1 (151390776-151391033) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ret (0.257467) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| ski (0.146735) | |
| lin (0.145603) | |
| sug (0.127291) | |
| pgl (0.118483) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (0.257467) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| ski (0.146735) | |
| lin (0.145603) | |
| sug (0.127291) | |
| pgl (0.118483) |