Non-Coding RNA Search

Ss1.1-rlin03_h6.5

Sequence:


               
               GTTAGAATTATTTATTAATTCACGTTATCCTAGTCTGTGAATTGTTCTGGAAACTCAGTT
TTTGGATGTTAGCCTACCTTTTGGCCCCACATTGCTCTAATTTTATTAAGCAGAACTATT
CTCACAGCCTGAAGAACTAATGTGGGCTACCAAGAGGCCTGAGGCACATGTGTGTAGGTG
TAATGATTACACATCGAAGGGTTGCCTCATCTGAAGAAGCAAGGATCCAGTCTATGTTTT
CATAGGGCTGATGGTCCAGTGGGAAAGGAGCACTAAGTCAGTGACCTGGGGTAGTAGGAG
AGAGACAGTGTCACACCTAGGAGAGAGTTTTACAAATGAGGTGGGACTCTGTAACTCACC
GTGGAAATGAATAAGCTTTTATGATGGCTGAAGATTGTGAAATGACTTCATTCCACAGCA
GGTATATGCATAAATTTGCTATTTATGAAGGTTAGATTGGCATTTAAAATGTTGAGTGTA
CGTTCAATACCTAATGATTTCTTAGGTTTTCTTTTTAAATGTTTTTTAAAATATAGAACA
GTCAACACACTGGTTCTTGATTTTTTGCAAGGTGTTCCCATAAAACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAGAATTATTTATTAATTCACGTTATCCTAGTCTGTGAATTGTTCTGGAAACTCAGTT
TTTGGATGTTAGCCTACCTTTTGGCCCCACATTGCTCTAATTTTATTAAGCAGAACTATT
CTCACAGCCTGAAGAACTAATGTGGGCTACCAAGAGGCCTGAGGCACATGTGTGTAGGTG
TAATGATTACACATCGAAGGGTTGCCTCATCTGAAGAAGCAAGGATCCAGTCTATGTTTT
CATAGGGCTGATGGTCCAGTGGGAAAGGAGCACTAAGTCAGTGACCTGGGGTAGTAGGAG
AGAGACAGTGTCACACCTAGGAGAGAGTTTTACAAATGAGGTGGGACTCTGTAACTCACC
GTGGAAATGAATAAGCTTTTATGATGGCTGAAGATTGTGAAATGACTTCATTCCACAGCA
GGTATATGCATAAATTTGCTATTTATGAAGGTTAGATTGGCATTTAAAATGTTGAGTGTA
CGTTCAATACCTAATGATTTCTTAGGTTTTCTTTTTAAATGTTTTTTAAAATATAGAACA
GTCAACACACTGGTTCTTGATTTTTTGCAAGGTGTTCCCATAAAACCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               378-471, - strand, RNAz p=0.964097

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               378-471, - strand, RNAz p=0.964097

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-159, gnl|bosTau2|chr1 (64932998-64933162)
               

               
               1-159, gnl|Hg17|chr3 (172802405-172802266)
               


               
               214-560, gnl|bosTau2|chr1 (64933457-64933821)
               

               
               214-560, gnl|Hg17|chr3 (172802181-172801751)
               

               
               214-560, gnl|Mm7|chr3 (27948731-27949132)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-159, gnl|bosTau2|chr1 (64932998-64933162)
               

               
               1-159, gnl|Hg17|chr3 (172802405-172802266)
               


               
               214-560, gnl|bosTau2|chr1 (64933457-64933821)
               

               
               214-560, gnl|Hg17|chr3 (172802181-172801751)
               

               
               214-560, gnl|Mm7|chr3 (27948731-27949132)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               rec (0.346141)
               

               
               lin (0.145603)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               lin (0.145603)
               

               
               spc (0.113366)

	1-159, gnl\|bosTau2\|chr1 (64932998-64933162)
	1-159, gnl\|Hg17\|chr3 (172802405-172802266)

	214-560, gnl\|bosTau2\|chr1 (64933457-64933821)
	214-560, gnl\|Hg17\|chr3 (172802181-172801751)
	214-560, gnl\|Mm7\|chr3 (27948731-27949132)