Non-Coding RNA Search

Ss1.1-rlin03_l13.5

Sequence:


               
               GGAGGAAATGTATTGCCAAGACTTTACCAGACTCAGATCATCTGAGGCTTCTAGATATTT
GACTTAATAAAATTTGAGCAGTGTCCTGTCTCCCGGGAACATACCTACAGCATCTTGAAC
TTGCTTTCTGAGCAGGGCAGACCCAGGTGATGATGAGTTTGTCTTTGAATATGTTTGTCC
TTCTTCAAATCCTTACCTCGCTAGACTGTAAACCTTTTGAGGGCAGGGATGATATCTTAA
CAACATTGCTTTCCCGGTACCTGGCATGATGAGACAGGTCCTCACTAATTATATGTTAAT
GAACGAATGTCTCCTAGAAGACTCCTCAGCTTAGGAGGCCGTATCCACAATCGGGACATG
AATTGTTGCTTCCCTGGATGAACTGGCCCAAACTTCAAGGACATGTTATCTATCAGATGA
ACATTTTACTGTGAGACTCTTTCCTTTGCCTTCCTCCCTGCGCTGAAGTGAAAGCAAGAT
AGGGTTTGGTTCTCCAAGTCAATATTCGTTGTGAGCGTATTCTGTTACCTTACTAGGAAC
TGTGAGACTTTATCTGGTGTAAGAAGCCAGCAATGAACTTTTAACCTGTTTTAACCAATG
AAGAGTACGAACGTGTTTATATGATGTAAATTGCTATTTAAGTATAAAGCAGTTCTAAAT
TTTAGTATTTTTGGGTTGGTTTGTATTTTCTTTTTGAAAAATACTGAAGGGTCTTTTGAT
AAAGTTAGTCATGCTCGCTAGATTTTAGTTTTACAAGTGTGTTGTTTTTCAAATGTAAAA
AAAAAAAAAAACCTAGGAGAAGTTAAAACAGTAAGAGGGAAAGGCAATTATATTATTATC
CGATAGTTAAAAAAAAGTTTGTGGCACGCCTACCGTGTGAACAGCCTGGAGCCGTATTTG
TGAGGAGCTTATCAAAGAATGGGGTGTGATCAATACTCCACAGAAGCCCACTGGAGAGAT
CCTTCCTGTTTCCTGTGTGTCAGTGGGAAGAGCAATCACAAGATCAGAGCTCAGTTAGCC
CCAGCACTGCTTCCCAGGACTCCATTTCTGGAATAAGAGATAGAAAGAACATTGTATAAA
TACTTATTGAGAAGGTGGCTCAAGAACCACTGAACTATAGGCACCTTCACCAGTTTAGCT
GAACCGGGGGATGGAGCTTTCTGTAACTATCTGCATAATTCCTGCTTCTCTTCCCATTGG
CTTCTGGGTTGACAATTTATGGAAAACAACCCTACTGCCACTATTTTTTTTTTTAAGTCA
GAAATCTTGCCCTGCAAACTATGTTAAATTCAAACTGAGTAGTTCTGTTTTATGAAAGAA
TTATATTTTTCAAAATATGGGGTTTTTTTGTTTGTTTGTTTGATGGGTCCCAGAAAACAC
TAATAAAAACTACAGAGACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGAAATGTATTGCCAAGACTTTACCAGACTCAGATCATCTGAGGCTTCTAGATATTT
GACTTAATAAAATTTGAGCAGTGTCCTGTCTCCCGGGAACATACCTACAGCATCTTGAAC
TTGCTTTCTGAGCAGGGCAGACCCAGGTGATGATGAGTTTGTCTTTGAATATGTTTGTCC
TTCTTCAAATCCTTACCTCGCTAGACTGTAAACCTTTTGAGGGCAGGGATGATATCTTAA
CAACATTGCTTTCCCGGTACCTGGCATGATGAGACAGGTCCTCACTAATTATATGTTAAT
GAACGAATGTCTCCTAGAAGACTCCTCAGCTTAGGAGGCCGTATCCACAATCGGGACATG
AATTGTTGCTTCCCTGGATGAACTGGCCCAAACTTCAAGGACATGTTATCTATCAGATGA
ACATTTTACTGTGAGACTCTTTCCTTTGCCTTCCTCCCTGCGCTGAAGTGAAAGCAAGAT
AGGGTTTGGTTCTCCAAGTCAATATTCGTTGTGAGCGTATTCTGTTACCTTACTAGGAAC
TGTGAGACTTTATCTGGTGTAAGAAGCCAGCAATGAACTTTTAACCTGTTTTAACCAATG
AAGAGTACGAACGTGTTTATATGATGTAAATTGCTATTTAAGTATAAAGCAGTTCTAAAT
TTTAGTATTTTTGGGTTGGTTTGTATTTTCTTTTTGAAAAATACTGAAGGGTCTTTTGAT
AAAGTTAGTCATGCTCGCTAGATTTTAGTTTTACAAGTGTGTTGTTTTTCAAATGTAAAA
AAAAAAAAAAACCTAGGAGAAGTTAAAACAGTAAGAGGGAAAGGCAATTATATTATTATC
CGATAGTTAAAAAAAAGTTTGTGGCACGCCTACCGTGTGAACAGCCTGGAGCCGTATTTG
TGAGGAGCTTATCAAAGAATGGGGTGTGATCAATACTCCACAGAAGCCCACTGGAGAGAT
CCTTCCTGTTTCCTGTGTGTCAGTGGGAAGAGCAATCACAAGATCAGAGCTCAGTTAGCC
CCAGCACTGCTTCCCAGGACTCCATTTCTGGAATAAGAGATAGAAAGAACATTGTATAAA
TACTTATTGAGAAGGTGGCTCAAGAACCACTGAACTATAGGCACCTTCACCAGTTTAGCT
GAACCGGGGGATGGAGCTTTCTGTAACTATCTGCATAATTCCTGCTTCTCTTCCCATTGG
CTTCTGGGTTGACAATTTATGGAAAACAACCCTACTGCCACTATTTTTTTTTTTAAGTCA
GAAATCTTGCCCTGCAAACTATGTTAAATTCAAACTGAGTAGTTCTGTTTTATGAAAGAA
TTATATTTTTCAAAATATGGGGTTTTTTTGTTTGTTTGTTTGATGGGTCCCAGAAAACAC
TAATAAAAACTACAGAGACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               310-415, + strand, RNAz p=0.515957

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               310-415, + strand, RNAz p=0.515957

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1399, gnl|bosTau2|chr15 (40412152-40410773)
               

               
               3-1399, gnl|Hg17|chr11 (34640007-34641400)
               

               
               3-1399, gnl|Mm7|chr2 (103115584-103114227)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1399, gnl|bosTau2|chr15 (40412152-40410773)
               

               
               3-1399, gnl|Hg17|chr11 (34640007-34641400)
               

               
               3-1399, gnl|Mm7|chr2 (103115584-103114227)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

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               pro (2.04813)
               

               
               sag (1.64444)
               

               
               lyg (1.06482)
               

               
               tra (0.738552)
               

               
               mga (0.64082)
               

               
               rec (0.519211)
               

               
               sin (0.349895)
               

               
               cut (0.339847)
               

               
               lin (0.291206)
               

               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (2.04813)
               

               
               sag (1.64444)
               

               
               lyg (1.06482)
               

               
               tra (0.738552)
               

               
               mga (0.64082)
               

               
               rec (0.519211)
               

               
               sin (0.349895)
               

               
               cut (0.339847)
               

               
               lin (0.291206)
               

               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

	3-1399, gnl\|bosTau2\|chr15 (40412152-40410773)
	3-1399, gnl\|Hg17\|chr11 (34640007-34641400)
	3-1399, gnl\|Mm7\|chr2 (103115584-103114227)

	pro (2.04813)
	sag (1.64444)
	lyg (1.06482)
	tra (0.738552)
	mga (0.64082)
	rec (0.519211)
	sin (0.349895)
	cut (0.339847)
	lin (0.291206)
	mgp (0.230681)
	mgm (0.180343)
	mcp (0.170648)
	liv (0.146284)
	pty (0.142714)
	csk (0.140746)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)