Ss1.1-rlin03_p21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGAAAACCAGATGCGTTATGCCCAGATGCAGCTGGACAAACTGAAGAAAACCAACGTCT TTAATGCGACCTTCCACATTTGGCACAGTGGACAATTTGGCACAATCAATAACTTCAGGC TGGGTCGCCTGCCCAGTGTTCCCGTGGAATGGAATGAGATTAATGCTGCCTGGGGCCAGA CAGTGTTGCTGCTCCATGCCCTGGCCAATAAGATGGGCCTGAAATTTCAGAGGTATCGAC TTGTTCCCTATGGAAACCATTCATATCTGGAGTCTCTGACAGACAAATCTAAGGAGCTGC CGTTGTACTGTTCTGGGGGGCTGCGGTTTTTCTGGGACAACAAGTTTGATCATGCGATGG TGGCTTTCCTGGACTGTGTGCAGCAGTTCAAAGAAGAGGTTGAGAAAGGCGAGACACGTT TTTGTCTTCCTTACAGGATGGATGTGGAGAAAGGCAAGATTGAAGACACAGGAGGCAGTG GCGGCTCCTATTCCATCAAAACCCAGTTTAACTCTGAGGAACAGTGGACAAAAGCTCTCA AGTTCATGCTGACGAATCTTAAGTGGGGTCTTGCTTGGGTATCCTCACAGTTTTATAACA AATGACTTTCTTTATTCCTTAGGGGATTGTTTGCCTCAAAGGCTTTAAAGTTTGTTTTGT TTTGAAAAAAAAAATTGTTAAATTAAAATCGGGTACTATTCAATAGCACATGTTTACAAT ACCAAAAAAGACAAAATCCACAAAAGCCACTTTATTTTAAAATAGGACAGAAAATTTCCA GAGCTACGACAGGCCATGTATAGTGCGACCAGCCTTTGTCATAGTTTTGACTCTTAACCC CATGCCTTCCTTTCCCTCTGACCCCTCAAAACAGCTAATTTGTTTGTTGTTGTTTTTTTA ACTGAGTTGAGAGTGACGTGTTTTCACTGGATTTTATTTCTCTCAATTTCCTGTACTTAC AGTATGAAGTAGAAACTTTTGTCTCCACTGAGACGACAAGATGTGTGATGCACAGCTGGA TAACGTGAGAAAATGACATATAAGCTTTGGTCACCATGTGATGTGATCAGAAGCTTGAAA TTCAACACTTCTCACTTGGTTCTAGTACTGAATGCCTGCTCTGCTCTGTGTTAGAGATAT GAAATGGTGTTTGATACTGTTTGAGACCTTATGGAGAGATTTAATTATTTGTAATAAAAG ATTTCCTGCAGTCTTATGACTGCCTAGAGGTGCACTGTTGGGTTTTTCTTTAACTAAAAT AGAGTGCTTTGTATTCTGGGAGAATTGAGTTCAAGTGCAGGTATGTGGAAAGTCTGTTGA AACGTGTTTAGAGATGGGTGTTAGTTTTTTAAAAAGACTCTAATGGAAAAATAGACAGCT GTGGAGAAAGCCCTATTTGTGTAGCTCTTAGTAAAGGAACAGAAATATTTAACTTTAAGG GAAAATAAAGGCTACTTCCTTGATGCTCAGTCAAGGTCACCCAGATGGTCTCAGTTTGGG TTAATACTAATCTCCATGTCTGATGTTCTCTCTTAATAAAATGAACAGTTAAAGAAAAGC CATAAATATCTTGTCAAACAGAAATAAACGAATTTCACTGATATCCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGAAAACCAGATGCGTTATGCCCAGATGCAGCTGGACAAACTGAAGAAAACCAACGTCT TTAATGCGACCTTCCACATTTGGCACAGTGGACAATTTGGCACAATCAATAACTTCAGGC TGGGTCGCCTGCCCAGTGTTCCCGTGGAATGGAATGAGATTAATGCTGCCTGGGGCCAGA CAGTGTTGCTGCTCCATGCCCTGGCCAATAAGATGGGCCTGAAATTTCAGAGGTATCGAC TTGTTCCCTATGGAAACCATTCATATCTGGAGTCTCTGACAGACAAATCTAAGGAGCTGC CGTTGTACTGTTCTGGGGGGCTGCGGTTTTTCTGGGACAACAAGTTTGATCATGCGATGG TGGCTTTCCTGGACTGTGTGCAGCAGTTCAAAGAAGAGGTTGAGAAAGGCGAGACACGTT TTTGTCTTCCTTACAGGATGGATGTGGAGAAAGGCAAGATTGAAGACACAGGAGGCAGTG GCGGCTCCTATTCCATCAAAACCCAGTTTAACTCTGAGGAACAGTGGACAAAAGCTCTCA AGTTCATGCTGACGAATCTTAAGTGGGGTCTTGCTTGGGTATCCTCACAGTTTTATAACA AATGACTTTCTTTATTCCTTAGGGGATTGTTTGCCTCAAAGGCTTTAAAGTTTGTTTTGT TTTGAAAAAAAAAATTGTTAAATTAAAATCGGGTACTATTCAATAGCACATGTTTACAAT ACCAAAAAAGACAAAATCCACAAAAGCCACTTTATTTTAAAATAGGACAGAAAATTTCCA GAGCTACGACAGGCCATGTATAGTGCGACCAGCCTTTGTCATAGTTTTGACTCTTAACCC CATGCCTTCCTTTCCCTCTGACCCCTCAAAACAGCTAATTTGTTTGTTGTTGTTTTTTTA ACTGAGTTGAGAGTGACGTGTTTTCACTGGATTTTATTTCTCTCAATTTCCTGTACTTAC AGTATGAAGTAGAAACTTTTGTCTCCACTGAGACGACAAGATGTGTGATGCACAGCTGGA TAACGTGAGAAAATGACATATAAGCTTTGGTCACCATGTGATGTGATCAGAAGCTTGAAA TTCAACACTTCTCACTTGGTTCTAGTACTGAATGCCTGCTCTGCTCTGTGTTAGAGATAT GAAATGGTGTTTGATACTGTTTGAGACCTTATGGAGAGATTTAATTATTTGTAATAAAAG ATTTCCTGCAGTCTTATGACTGCCTAGAGGTGCACTGTTGGGTTTTTCTTTAACTAAAAT AGAGTGCTTTGTATTCTGGGAGAATTGAGTTCAAGTGCAGGTATGTGGAAAGTCTGTTGA AACGTGTTTAGAGATGGGTGTTAGTTTTTTAAAAAGACTCTAATGGAAAAATAGACAGCT GTGGAGAAAGCCCTATTTGTGTAGCTCTTAGTAAAGGAACAGAAATATTTAACTTTAAGG GAAAATAAAGGCTACTTCCTTGATGCTCAGTCAAGGTCACCCAGATGGTCTCAGTTTGGG TTAATACTAATCTCCATGTCTGATGTTCTCTCTTAATAAAATGAACAGTTAAAGAAAAGC CATAAATATCTTGTCAAACAGAAATAAACGAATTTCACTGATATCCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 72-191, + strand, RNAz p=0.52198 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 72-191, + strand, RNAz p=0.52198 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 3-294, gnl|bosTau2|chr6 (63744498-63744207) | |
| 3-294, gnl|Hg17|chr17 (38221531-38219491) | |
| 3-294, gnl|Mm7|chr11 (101403119-101399477) | |
| 70-235, gnl|bosTau2|chr19 (38927479-38927644) | |
| 70-235, gnl|canFam2|chr9 (23529954-23529760) | |
| 70-235, gnl|danRer3|chr12 (9605844-9605665) | |
| 70-235, gnl|dasNov1|scaffold_26565 (16429-16623) | |
| 70-235, gnl|echTel1|scaffold_237700 (557-702) | |
| 70-235, gnl|fr1|chrUn (226233971-226234127) | |
| 70-235, gnl|galGal2|chr27_random (140665-140463) | |
| 70-235, gnl|hg17|chr17 (38220063-38220259) | |
| 70-235, gnl|Hg17|chr17 (38220230-38220065) | |
| 70-235, gnl|loxAfr1|scaffold_5870 (48064-48259) | |
| 70-235, gnl|mm7|chr11 (101400417-101400605) | |
| 70-235, gnl|Mm7|chr11 (101400589-101400419) | |
| 70-235, gnl|monDom2|scaffold_18 (53356008-53356204) | |
| 70-235, gnl|oryCun1|scaffold_197065 (46718-46914) | |
| 70-235, gnl|panTro1|chr19 (41408604-41408800) | |
| 70-235, gnl|rheMac2|chr16 (52936486-52936682) | |
| 70-235, gnl|rn3|chr10 (90335553-90335746) | |
| 70-235, gnl|tetNig1|chr2 (6449169-6449330) | |
| 70-235, gnl|xenTro1|scaffold_92 (396319-396145) | |
| 423-1602, gnl|bosTau2|chr19 (38929893-38931091) | |
| 423-1602, gnl|Hg17|chr17 (38216487-38215304) | |
| 423-1602, gnl|Mm7|chr11 (101398035-101396835) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-294, gnl|bosTau2|chr6 (63744498-63744207) | |
| 3-294, gnl|Hg17|chr17 (38221531-38219491) | |
| 3-294, gnl|Mm7|chr11 (101403119-101399477) | |
| 70-235, gnl|bosTau2|chr19 (38927479-38927644) | |
| 70-235, gnl|canFam2|chr9 (23529954-23529760) | |
| 70-235, gnl|danRer3|chr12 (9605844-9605665) | |
| 70-235, gnl|dasNov1|scaffold_26565 (16429-16623) | |
| 70-235, gnl|echTel1|scaffold_237700 (557-702) | |
| 70-235, gnl|fr1|chrUn (226233971-226234127) | |
| 70-235, gnl|galGal2|chr27_random (140665-140463) | |
| 70-235, gnl|hg17|chr17 (38220063-38220259) | |
| 70-235, gnl|Hg17|chr17 (38220230-38220065) | |
| 70-235, gnl|loxAfr1|scaffold_5870 (48064-48259) | |
| 70-235, gnl|mm7|chr11 (101400417-101400605) | |
| 70-235, gnl|Mm7|chr11 (101400589-101400419) | |
| 70-235, gnl|monDom2|scaffold_18 (53356008-53356204) | |
| 70-235, gnl|oryCun1|scaffold_197065 (46718-46914) | |
| 70-235, gnl|panTro1|chr19 (41408604-41408800) | |
| 70-235, gnl|rheMac2|chr16 (52936486-52936682) | |
| 70-235, gnl|rn3|chr10 (90335553-90335746) | |
| 70-235, gnl|tetNig1|chr2 (6449169-6449330) | |
| 70-235, gnl|xenTro1|scaffold_92 (396319-396145) | |
| 423-1602, gnl|bosTau2|chr19 (38929893-38931091) | |
| 423-1602, gnl|Hg17|chr17 (38216487-38215304) | |
| 423-1602, gnl|Mm7|chr11 (101398035-101396835) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| tes (0.415628) | |
| tra (0.369276) | |
| cbl (0.344392) | |
| mcp (0.341297) | |
| cty (0.31224) | |
| tbr (0.308356) | |
| cte (0.29274) | |
| sug (0.254582) | |
| spc (0.226732) | |
| jej (0.197844) | |
| eye (0.170503) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ecc (0.115035) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) | |
| tra (0.369276) | |
| cbl (0.344392) | |
| mcp (0.341297) | |
| cty (0.31224) | |
| tbr (0.308356) | |
| cte (0.29274) | |
| sug (0.254582) | |
| spc (0.226732) | |
| jej (0.197844) | |
| eye (0.170503) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ecc (0.115035) |