Non-Coding RNA Search

Ss1.1-rlin05_d7.5

Sequence:


               
               GTGAGAGTGAAAAAAAATTTTTTTAAATAAGAGAAAAGGGGGAAATAGCATATTTGGTAT
TCATTTTTAAAATCCTAACTAGATTTTTAAAAATTATGTATCCACTATTTACTCATTTAC
TCTCTTATCATTCATGCTAAAATTCCTGTGCCATGTTGTCCCTCCTTTTAAATTTTATGA
TACACGTAAAATTAGGTTTGGCAAGTAATTTTTTGCCTAAAATGTAAAGCTTGACTGTAA
CTCCATAATCATCACTCTCAGCCTAGGTAATATGTTTGGACAGCTCTGAGAGATAATCCC
AAAATAACAGATGAAAAGGATCTAGTCAAAAACATGGTACCAAGTGAATCTGGGGTAGTC
ATTACCTTAAAATTACATCCAATATTTTGGAATATGGTCTCTCTCTGGTTGTTATCCAAA
ATGGTATAAACCTGAAAGTAAAATCACTTAGGCTAGGTGGCAGATTCCAAATGGCAAGTG
ACAGTTAATACTCTAAGGTTTCTATTAGATATGTGATTTTAAACTTGTTTTCTAATATGT
AACTTTATTTGCTAATTCTTAATAATGTTGATGCTTTGTCCATTACTTTTTTATTTTTAC
CACTGTTAAGCGGGAAACTTTAACCAAGAACCCTTGGTTATGGTCATGTTTGTGTTAAGT
AATAACCACACCATCATTTGTACAATCACTTCAATAAATCTAAGTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGAGTGAAAAAAAATTTTTTTAAATAAGAGAAAAGGGGGAAATAGCATATTTGGTAT
TCATTTTTAAAATCCTAACTAGATTTTTAAAAATTATGTATCCACTATTTACTCATTTAC
TCTCTTATCATTCATGCTAAAATTCCTGTGCCATGTTGTCCCTCCTTTTAAATTTTATGA
TACACGTAAAATTAGGTTTGGCAAGTAATTTTTTGCCTAAAATGTAAAGCTTGACTGTAA
CTCCATAATCATCACTCTCAGCCTAGGTAATATGTTTGGACAGCTCTGAGAGATAATCCC
AAAATAACAGATGAAAAGGATCTAGTCAAAAACATGGTACCAAGTGAATCTGGGGTAGTC
ATTACCTTAAAATTACATCCAATATTTTGGAATATGGTCTCTCTCTGGTTGTTATCCAAA
ATGGTATAAACCTGAAAGTAAAATCACTTAGGCTAGGTGGCAGATTCCAAATGGCAAGTG
ACAGTTAATACTCTAAGGTTTCTATTAGATATGTGATTTTAAACTTGTTTTCTAATATGT
AACTTTATTTGCTAATTCTTAATAATGTTGATGCTTTGTCCATTACTTTTTTATTTTTAC
CACTGTTAAGCGGGAAACTTTAACCAAGAACCCTTGGTTATGGTCATGTTTGTGTTAAGT
AATAACCACACCATCATTTGTACAATCACTTCAATAAATCTAAGTTAA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               64-708, gnl|bosTau2|chr1 (68911548-68912181)
               

               
               64-708, gnl|canFam2|chr34 (30071879-30072531)
               

               
               64-708, gnl|echTel1|scaffold_314501 (41520-40881)
               

               
               64-708, gnl|hg17|chr3 (162274560-162275226)
               

               
               64-708, gnl|Hg17|chr3 (162274582-162275270)
               

               
               64-708, gnl|loxAfr1|scaffold_3921 (76605-75976)
               

               
               64-708, gnl|mm7|chr3 (69658236-69658900)
               

               
               64-708, gnl|Mm7|chr3 (69658258-69658930)
               

               
               64-708, gnl|oryCun1|scaffold_208987 (44153-44797)
               

               
               64-708, gnl|panTro1|chr2 (165532255-165532920)
               

               
               64-708, gnl|rheMac2|chr2 (126627047-126626378)
               

               
               64-708, gnl|rn3|chr2 (159608961-159609616)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-708, gnl|bosTau2|chr1 (68911548-68912181)
               

               
               64-708, gnl|canFam2|chr34 (30071879-30072531)
               

               
               64-708, gnl|echTel1|scaffold_314501 (41520-40881)
               

               
               64-708, gnl|hg17|chr3 (162274560-162275226)
               

               
               64-708, gnl|Hg17|chr3 (162274582-162275270)
               

               
               64-708, gnl|loxAfr1|scaffold_3921 (76605-75976)
               

               
               64-708, gnl|mm7|chr3 (69658236-69658900)
               

               
               64-708, gnl|Mm7|chr3 (69658258-69658930)
               

               
               64-708, gnl|oryCun1|scaffold_208987 (44153-44797)
               

               
               64-708, gnl|panTro1|chr2 (165532255-165532920)
               

               
               64-708, gnl|rheMac2|chr2 (126627047-126626378)
               

               
               64-708, gnl|rn3|chr2 (159608961-159609616)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)

	64-708, gnl\|bosTau2\|chr1 (68911548-68912181)
	64-708, gnl\|canFam2\|chr34 (30071879-30072531)
	64-708, gnl\|echTel1\|scaffold_314501 (41520-40881)
	64-708, gnl\|hg17\|chr3 (162274560-162275226)
	64-708, gnl\|Hg17\|chr3 (162274582-162275270)
	64-708, gnl\|loxAfr1\|scaffold_3921 (76605-75976)
	64-708, gnl\|mm7\|chr3 (69658236-69658900)
	64-708, gnl\|Mm7\|chr3 (69658258-69658930)
	64-708, gnl\|oryCun1\|scaffold_208987 (44153-44797)
	64-708, gnl\|panTro1\|chr2 (165532255-165532920)
	64-708, gnl\|rheMac2\|chr2 (126627047-126626378)
	64-708, gnl\|rn3\|chr2 (159608961-159609616)

	isp (0.300752)
	bfe (0.299715)
	lin (0.291206)
	fbs (0.175346)
	tbr (0.154178)