Non-Coding RNA Search

Ss1.1-rlin06_n18.5

Sequence:


               
               TCTTTTTTAGTGACCAGTTTAATATATAATTTAGTTTTTTGTGACCAGTTTAATTTTTAA
CAGATATAGGTAGTTACCTAAAGATTCATTACAACTCCAGAGAAAAGTCTTAGAAATGCT
GTACTATTAGCCAAAATAAAGTCCTTTAAATTAAAAACCCAAATCAAAACAAGCTCTTAG
AATGTAATTGAGCTTATAAAATGTCTCCTCATAACTCGTTTCTTTTATAGAGTTATTATT
CCCAAAGACTTTGATTGGCAGGTTCATCTATTAATTATTGCTGTAGAATGTTTTAAGAAG
TCCTTGTAAACATACCGGACTTATACTTGGTAATTATATTCCTATGAAACATCTTTTTCT
ATCCTTTCAAATGGCAGTGTTACTAATAACCAGATTTGTTTCTTTAGAGGTATGTTGCTT
TTTATTAATTATTGGTGGGTATATTAGAATGCACAGATCAGTATAAGTAGGTCTAAATAT
ATGTATAGATATGTATATATCGTTCACTATCTGGATCTGTGTATTTGGTTTTTGTACTTT
AAATGTGGCAAATAAACCTTTTGGGAGGAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTTTTAGTGACCAGTTTAATATATAATTTAGTTTTTTGTGACCAGTTTAATTTTTAA
CAGATATAGGTAGTTACCTAAAGATTCATTACAACTCCAGAGAAAAGTCTTAGAAATGCT
GTACTATTAGCCAAAATAAAGTCCTTTAAATTAAAAACCCAAATCAAAACAAGCTCTTAG
AATGTAATTGAGCTTATAAAATGTCTCCTCATAACTCGTTTCTTTTATAGAGTTATTATT
CCCAAAGACTTTGATTGGCAGGTTCATCTATTAATTATTGCTGTAGAATGTTTTAAGAAG
TCCTTGTAAACATACCGGACTTATACTTGGTAATTATATTCCTATGAAACATCTTTTTCT
ATCCTTTCAAATGGCAGTGTTACTAATAACCAGATTTGTTTCTTTAGAGGTATGTTGCTT
TTTATTAATTATTGGTGGGTATATTAGAATGCACAGATCAGTATAAGTAGGTCTAAATAT
ATGTATAGATATGTATATATCGTTCACTATCTGGATCTGTGTATTTGGTTTTTGTACTTT
AAATGTGGCAAATAAACCTTTTGGGAGGAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               429-544, + strand, RNAz p=0.85305

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               429-544, + strand, RNAz p=0.85305

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-571, gnl|bosTau2|chr3 (3209065-3208510)
               

               
               1-571, gnl|Hg17|chr1 (163557980-163557405)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-571, gnl|bosTau2|chr3 (3209065-3208510)
               

               
               1-571, gnl|Hg17|chr1 (163557980-163557405)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               lin (0.436808)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               tra (0.123092)

	1-571, gnl\|bosTau2\|chr3 (3209065-3208510)
	1-571, gnl\|Hg17\|chr1 (163557980-163557405)