Ss1.1-rlin07_c19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGTCATACCCACTGTGGGAAGGTTTCTTGCATACTCTGATGACAAAGTACATGCTATCT TTTTAGATGGCATTACTCTAACCCTGAATTGGAATTTCAGCACTTTTATTCAAAAGAGAC AGGTAAATCGGGGTCTCAACTTAGGTTGGTGTAAGTTAACTTTTCCTGATGGACAAGATA AGTTAATTCAGATTCAACACCCTGGACCATATGAAAGATATGTGACAACAGTAATATCAT GGTGCAGAAGACTGACCCAGACTAGTCAGAAGGAGATACCCAGGCATCCTTCATCTTCTT TTCCTGAAGAAAACTGGTCTGTGGCTTCTGAACTTGAAAAGATACAGAAGTTTAACTTGT TACTGGAGAATAGTGGTGTCCTAAACCATATTTCTAACAAGAAAAATGAACAGTCTTCAG ATCATTATAAACCCAAATCTTCAGAACTCTTGCTAAAAGAAGTTAATGAAAACAGTGTAT CAGTGGCATTGAGAAAAACCTCTGAAATCCTTCAGGATATTGACTCTCTTCTATCAAACT CCAAAAGGTAAAAAATATTAAACCTTGAGGATGTTATTTCAAGTGACTGATAGAAAATTA CTAGAAAGCCAAAAACTGATCTGTATGACTTTTGTACATTGATTACTTAATGAGAACTTG AACTTAAGGAGAGATTTTACACTAACTTGTAAATTTTAAATGTATATTTATATTTTATTA ATAAAGAACTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGTCATACCCACTGTGGGAAGGTTTCTTGCATACTCTGATGACAAAGTACATGCTATCT TTTTAGATGGCATTACTCTAACCCTGAATTGGAATTTCAGCACTTTTATTCAAAAGAGAC AGGTAAATCGGGGTCTCAACTTAGGTTGGTGTAAGTTAACTTTTCCTGATGGACAAGATA AGTTAATTCAGATTCAACACCCTGGACCATATGAAAGATATGTGACAACAGTAATATCAT GGTGCAGAAGACTGACCCAGACTAGTCAGAAGGAGATACCCAGGCATCCTTCATCTTCTT TTCCTGAAGAAAACTGGTCTGTGGCTTCTGAACTTGAAAAGATACAGAAGTTTAACTTGT TACTGGAGAATAGTGGTGTCCTAAACCATATTTCTAACAAGAAAAATGAACAGTCTTCAG ATCATTATAAACCCAAATCTTCAGAACTCTTGCTAAAAGAAGTTAATGAAAACAGTGTAT CAGTGGCATTGAGAAAAACCTCTGAAATCCTTCAGGATATTGACTCTCTTCTATCAAACT CCAAAAGGTAAAAAATATTAAACCTTGAGGATGTTATTTCAAGTGACTGATAGAAAATTA CTAGAAAGCCAAAAACTGATCTGTATGACTTTTGTACATTGATTACTTAATGAGAACTTG AACTTAAGGAGAGATTTTACACTAACTTGTAAATTTTAAATGTATATTTATATTTTATTA ATAAAGAACTAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-126, + strand, RNAz p=0.903795 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-126, + strand, RNAz p=0.903795 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-126, gnl|bosTau2|chr20 (16950991-16951116) | |
| 1-126, gnl|canFam2|chr4 (69716542-69716333) | |
| 1-126, gnl|dasNov1|scaffold_28077 (2709-2502) | |
| 1-126, gnl|echTel1|scaffold_174846 (10131-10338) | |
| 1-126, gnl|galGal2|chrZ (6780626-6780834) | |
| 1-126, gnl|hg17|chr5 (43528572-43528781) | |
| 1-126, gnl|Hg17|chr5 (43528700-43528575) | |
| 1-126, gnl|loxAfr1|scaffold_23573 (4865-4656) | |
| 1-126, gnl|mm7|chr13 (116687232-116687023) | |
| 1-126, gnl|Mm7|chr13 (116687102-116687227) | |
| 1-126, gnl|monDom2|scaffold_20 (27236707-27236506) | |
| 1-126, gnl|oryCun1|scaffold_187907 (11886-11622) | |
| 1-126, gnl|panTro1|chr4 (72990342-72990133) | |
| 1-126, gnl|rheMac2|chr6 (43432296-43432505) | |
| 1-126, gnl|rn3|chr2 (51585317-51585108) | |
| 216-318, gnl|bosTau2|chr20 (16953177-16953279) | |
| 216-318, gnl|canFam2|chr4 (69718913-69718710) | |
| 216-318, gnl|echTel1|scaffold_174846 (6415-6628) | |
| 216-318, gnl|hg17|chr5 (43526443-43526651) | |
| 216-318, gnl|Hg17|chr5 (43526590-43526488) | |
| 216-318, gnl|loxAfr1|scaffold_23573 (6961-6749) | |
| 216-318, gnl|mm7|chr13 (116690538-116690210) | |
| 216-318, gnl|Mm7|chr13 (116690302-116690401) | |
| 216-318, gnl|monDom2|scaffold_20 (27239501-27239298) | |
| 216-318, gnl|oryCun1|scaffold_187907 (15185-14989) | |
| 216-318, gnl|panTro1|chr4 (72992470-72992262) | |
| 216-318, gnl|rheMac2|chr6 (43430163-43430370) | |
| 216-318, gnl|rn3|chr2 (51587991-51587815) | |
| 358-732, gnl|bosTau2|chr20 (16959908-16960306) | |
| 358-732, gnl|Hg17|chr5 (43522970-43522579) | |
| 358-732, gnl|Mm7|chr13 (116695096-116695475) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-126, gnl|bosTau2|chr20 (16950991-16951116) | |
| 1-126, gnl|canFam2|chr4 (69716542-69716333) | |
| 1-126, gnl|dasNov1|scaffold_28077 (2709-2502) | |
| 1-126, gnl|echTel1|scaffold_174846 (10131-10338) | |
| 1-126, gnl|galGal2|chrZ (6780626-6780834) | |
| 1-126, gnl|hg17|chr5 (43528572-43528781) | |
| 1-126, gnl|Hg17|chr5 (43528700-43528575) | |
| 1-126, gnl|loxAfr1|scaffold_23573 (4865-4656) | |
| 1-126, gnl|mm7|chr13 (116687232-116687023) | |
| 1-126, gnl|Mm7|chr13 (116687102-116687227) | |
| 1-126, gnl|monDom2|scaffold_20 (27236707-27236506) | |
| 1-126, gnl|oryCun1|scaffold_187907 (11886-11622) | |
| 1-126, gnl|panTro1|chr4 (72990342-72990133) | |
| 1-126, gnl|rheMac2|chr6 (43432296-43432505) | |
| 1-126, gnl|rn3|chr2 (51585317-51585108) | |
| 216-318, gnl|bosTau2|chr20 (16953177-16953279) | |
| 216-318, gnl|canFam2|chr4 (69718913-69718710) | |
| 216-318, gnl|echTel1|scaffold_174846 (6415-6628) | |
| 216-318, gnl|hg17|chr5 (43526443-43526651) | |
| 216-318, gnl|Hg17|chr5 (43526590-43526488) | |
| 216-318, gnl|loxAfr1|scaffold_23573 (6961-6749) | |
| 216-318, gnl|mm7|chr13 (116690538-116690210) | |
| 216-318, gnl|Mm7|chr13 (116690302-116690401) | |
| 216-318, gnl|monDom2|scaffold_20 (27239501-27239298) | |
| 216-318, gnl|oryCun1|scaffold_187907 (15185-14989) | |
| 216-318, gnl|panTro1|chr4 (72992470-72992262) | |
| 216-318, gnl|rheMac2|chr6 (43430163-43430370) | |
| 216-318, gnl|rn3|chr2 (51587991-51587815) | |
| 358-732, gnl|bosTau2|chr20 (16959908-16960306) | |
| 358-732, gnl|Hg17|chr5 (43522970-43522579) | |
| 358-732, gnl|Mm7|chr13 (116695096-116695475) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| lin (0.436808) | |
| ret (0.257467) | |
| tes (0.207814) | |
| ski (0.146735) | |
| csk (0.140746) | |
| ova (0.129132) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.436808) | |
| ret (0.257467) | |
| tes (0.207814) | |
| ski (0.146735) | |
| csk (0.140746) | |
| ova (0.129132) | |
| eje (0.0988338) |