Non-Coding RNA Search

Ss1.1-rlin07_o24.5

Sequence:


               
               ACCTCAGGGAGCAGAGCGCCTGCTGTCATGGTCACCTCTTGGGTCTGTCTTTTGAGAGAG
GCTGAGTACAAGGCGAGACAGCCAACTGCATAACCACAGGGTAGGACCACAGGGTTCCTC
GGCCTGGGTGGGTTTCCCGGGGGGGGCCTGGAGCAGCACGCGTGCTTCCCTGCAGCTGTC
TCTCTCCTCCTTGGTTGATTCTGCACGTTGGCCAGGCAGGTGTCCTTGCAGGAGGCACCT
GTCTCAAAGGGAGGGCTCCTGGGGACATGGTGTCCAGCACCTGCGCCCCCACCCACCCCA
TTCTGGTCGATTCCTCCAGCCACACCTCAGGGGTCTGGGGATCCCTTGGGCCCAGTCCTT
CAACTTGTCCCAGGACTCTGAGCCCGCTTGCCCCAGGAGAGAAGGGCTGGCAGGAACACC
TGCCTGTTAGGAGAGCAGTATTGGCCCCAGGGAGGCCTCACCAGCAAAGGAACCGTGTGT
GCATTTTAATGCCGGGTGATGGAGAACACGTGAGCTTCCAAGTCAGGGCCTCCCCAGGCC
TAAGACTAGCTTTGCCTTTTCATTTGACCTGTGAATCCCCGCTCTGCGCCACCTTAACCA
CTAACAGCTCCGTTCACACACCCTCTCAACAACAGTAGTTGCGCTTTATGCTCTAACAGT
AACGTTTTCAGCTCTTACCAAGAATCAGGATTTTTAAATGCTGGAGCATCTCTTATCAGA
AGGGATAGGATATTTCATCCAAAGCCTCTAAAACAAACAGAAAAGCCCCAGTCGGCTGCT
CCCTTTCCTTCTGACCTGAAGTGGGGGTTGGGAGGGAGTAGGCAGGTTACCTAATAAGGA
GCTCTCTGGCTTCCTTTGGCGGAGCCCTTTCACCAAGCCTGGCGGTGAGTGAGCGCAGGC
CGAGGCTGGCATCTTTCTCTACAGAGAGATATTTTAGGAAATACTTTTCTCCCCCATGAA
TTTTTTTCTTTCGGTTGATTTTTATTGTTTGCCCTTTATTTACAAGAAAATAAGATCGCA
ACCCCTCCTGGTAATGATTTAGTAGTTCCTTTTCATTTCAGTTTTTGTAAATTAGGAGAT
AATTCTAAGAGTTACTAAGGATGATTTATTTAAGAGAACTACGTCAAATAGCGAATGAGT
TATGGGTAACATTAGATGAAAATAACCTTTCCCACGGGAAAGGTTTCTCGAAGGCATGGA
TGCAAATATAAAATATTAAAAAAAAATCTAAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTCAGGGAGCAGAGCGCCTGCTGTCATGGTCACCTCTTGGGTCTGTCTTTTGAGAGAG
GCTGAGTACAAGGCGAGACAGCCAACTGCATAACCACAGGGTAGGACCACAGGGTTCCTC
GGCCTGGGTGGGTTTCCCGGGGGGGGCCTGGAGCAGCACGCGTGCTTCCCTGCAGCTGTC
TCTCTCCTCCTTGGTTGATTCTGCACGTTGGCCAGGCAGGTGTCCTTGCAGGAGGCACCT
GTCTCAAAGGGAGGGCTCCTGGGGACATGGTGTCCAGCACCTGCGCCCCCACCCACCCCA
TTCTGGTCGATTCCTCCAGCCACACCTCAGGGGTCTGGGGATCCCTTGGGCCCAGTCCTT
CAACTTGTCCCAGGACTCTGAGCCCGCTTGCCCCAGGAGAGAAGGGCTGGCAGGAACACC
TGCCTGTTAGGAGAGCAGTATTGGCCCCAGGGAGGCCTCACCAGCAAAGGAACCGTGTGT
GCATTTTAATGCCGGGTGATGGAGAACACGTGAGCTTCCAAGTCAGGGCCTCCCCAGGCC
TAAGACTAGCTTTGCCTTTTCATTTGACCTGTGAATCCCCGCTCTGCGCCACCTTAACCA
CTAACAGCTCCGTTCACACACCCTCTCAACAACAGTAGTTGCGCTTTATGCTCTAACAGT
AACGTTTTCAGCTCTTACCAAGAATCAGGATTTTTAAATGCTGGAGCATCTCTTATCAGA
AGGGATAGGATATTTCATCCAAAGCCTCTAAAACAAACAGAAAAGCCCCAGTCGGCTGCT
CCCTTTCCTTCTGACCTGAAGTGGGGGTTGGGAGGGAGTAGGCAGGTTACCTAATAAGGA
GCTCTCTGGCTTCCTTTGGCGGAGCCCTTTCACCAAGCCTGGCGGTGAGTGAGCGCAGGC
CGAGGCTGGCATCTTTCTCTACAGAGAGATATTTTAGGAAATACTTTTCTCCCCCATGAA
TTTTTTTCTTTCGGTTGATTTTTATTGTTTGCCCTTTATTTACAAGAAAATAAGATCGCA
ACCCCTCCTGGTAATGATTTAGTAGTTCCTTTTCATTTCAGTTTTTGTAAATTAGGAGAT
AATTCTAAGAGTTACTAAGGATGATTTATTTAAGAGAACTACGTCAAATAGCGAATGAGT
TATGGGTAACATTAGATGAAAATAACCTTTCCCACGGGAAAGGTTTCTCGAAGGCATGGA
TGCAAATATAAAATATTAAAAAAAAATCTAAATAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               230-342, - strand, RNAz p=0.970253
               

               
               383-501, - strand, RNAz p=0.885713
               

               
               1098-1236, + strand, RNAz p=0.637073

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               230-342, - strand, RNAz p=0.970253
               

               
               383-501, - strand, RNAz p=0.885713
               

               
               1098-1236, + strand, RNAz p=0.637073

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               356-468, - strand, RNAmicro p=0.904452

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               356-468, - strand, RNAmicro p=0.904452

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1236, gnl|bosTau2|chr16 (38316988-38318210)
               

               
               1-1236, gnl|Hg17|chr1 (15138736-15139936)
               

               
               1-1236, gnl|Mm7|chr4 (141518897-141517699)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1236, gnl|bosTau2|chr16 (38316988-38318210)
               

               
               1-1236, gnl|Hg17|chr1 (15138736-15139936)
               

               
               1-1236, gnl|Mm7|chr4 (141518897-141517699)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               pro (0.512033)
               

               
               amn (0.417711)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               amn (0.417711)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

	230-342, - strand, RNAz p=0.970253
	383-501, - strand, RNAz p=0.885713
	1098-1236, + strand, RNAz p=0.637073

	1-1236, gnl\|bosTau2\|chr16 (38316988-38318210)
	1-1236, gnl\|Hg17\|chr1 (15138736-15139936)
	1-1236, gnl\|Mm7\|chr4 (141518897-141517699)

	pro (0.512033)
	amn (0.417711)
	ece (0.229305)
	fhi (0.169578)
	csp (0.161186)
	lin (0.145603)
	pla (0.133672)
	tra (0.123092)
	cly (0.120642)
	eru (0.120048)