Ss1.1-rlin09_b11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTATACTTGCTGTGTTTAAATATTAGTTGTCTTTTTAGGCTTGGTT------------ TTGGGATACATCTAAAGCTGTGAGGTCTGTCATGGTGAGAGGGACAGCTGTCATTCTGAA TTGCTAATGGTAAACATCTCAGTAATTTTAGAATAGTATGTATTTAATTTATATTTTTTT ATGCTGCAGTCATATTTCAGATTTCAGGAGAAGAGGGATGAACAGTAACCTTTGAGCACC TTCCATGTGCTTGACATTGTGTGTCAGGAGATTTCACGGTACCTCAGTTTGTCCTCACAC CCCTATGTAGTGGGTGTGTGTTATAACCTCTATTGGAGAGTTCTGTAATTTGCTAAAATA CCAGTTTGCACTTCTACTATCCTCATTTGCCATTTGGAAATAGGATTAGGATGGAGATAA TTTGGAAAGCAGAAAAGTAAATCCAGAATTAATAAGCTTTTACCACTTTCTAGACTTAAA TACGCTGAATGGATTTGGTGATTCTACCAAAAAGGACACAGAGGCAGTGAAGCATGACTC CGCCGCAGTTGATCAGTCCATGGCATGTCTTCTTACAGTNACGTGGTGATCTTGATTTTG CTGAGCAGCTGTGGTGCAAAATGAGCAGTACTGTGATTTCTTATCAAGACTTGGTGAAGT GTTTTGCGTTGATCATCCAGAGTCTCCAACGTGGTGATATACAGCCATGGCTTCATAGTG GGAGTAACAGTTTACTAAGTAAGCTCATTCATCAGTCTTACCATGGAACCATGGACACGG TTTCTCTCAGCGGGACTGTTCCAGTTCAGATGCTTTTGGAAATTGGTTTGGATAAATTGA AGAAAGATTATATCTGTTTTTTCATAGGTCAGGAACTTGCATCTTTGAATCATTTGGAGT ATTTCATTTCTCCATCAGTAGATACACATGAAAAGGTGTATCGTGTTCAAAAACTTCACC ATATTCTTGAAATAGTAGTCAGTTGCATGCTTTTCATTAAACCTCAACATGAGCTTCTCT TTTCTTTAACACAATCTTGCATAAAATATTATAAACAAAATCCTCTTGATGAGCAACACA TTTTCCAGCTGCCAATCAGACCAACTGCTATAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTATACTTGCTGTGTTTAAATATTAGTTGTCTTTTTAGGCTTGGTT------------ TTGGGATACATCTAAAGCTGTGAGGTCTGTCATGGTGAGAGGGACAGCTGTCATTCTGAA TTGCTAATGGTAAACATCTCAGTAATTTTAGAATAGTATGTATTTAATTTATATTTTTTT ATGCTGCAGTCATATTTCAGATTTCAGGAGAAGAGGGATGAACAGTAACCTTTGAGCACC TTCCATGTGCTTGACATTGTGTGTCAGGAGATTTCACGGTACCTCAGTTTGTCCTCACAC CCCTATGTAGTGGGTGTGTGTTATAACCTCTATTGGAGAGTTCTGTAATTTGCTAAAATA CCAGTTTGCACTTCTACTATCCTCATTTGCCATTTGGAAATAGGATTAGGATGGAGATAA TTTGGAAAGCAGAAAAGTAAATCCAGAATTAATAAGCTTTTACCACTTTCTAGACTTAAA TACGCTGAATGGATTTGGTGATTCTACCAAAAAGGACACAGAGGCAGTGAAGCATGACTC CGCCGCAGTTGATCAGTCCATGGCATGTCTTCTTACAGTNACGTGGTGATCTTGATTTTG CTGAGCAGCTGTGGTGCAAAATGAGCAGTACTGTGATTTCTTATCAAGACTTGGTGAAGT GTTTTGCGTTGATCATCCAGAGTCTCCAACGTGGTGATATACAGCCATGGCTTCATAGTG GGAGTAACAGTTTACTAAGTAAGCTCATTCATCAGTCTTACCATGGAACCATGGACACGG TTTCTCTCAGCGGGACTGTTCCAGTTCAGATGCTTTTGGAAATTGGTTTGGATAAATTGA AGAAAGATTATATCTGTTTTTTCATAGGTCAGGAACTTGCATCTTTGAATCATTTGGAGT ATTTCATTTCTCCATCAGTAGATACACATGAAAAGGTGTATCGTGTTCAAAAACTTCACC ATATTCTTGAAATAGTAGTCAGTTGCATGCTTTTCATTAAACCTCAACATGAGCTTCTCT TTTCTTTAACACAATCTTGCATAAAATATTATAAACAAAATCCTCTTGATGAGCAACACA TTTTCCAGCTGCCAATCAGACCAACTGCTATAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 698-797, + strand, RNAz p=0.524016 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 698-797, + strand, RNAz p=0.524016 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-518, gnl|bosTau2|chr10 (6999301-6998771) | |
| 1-518, gnl|Hg17|chr15 (64606803-64607312) | |
| 698-860, gnl|bosTau2|chr10 (6994502-6994340) | |
| 698-860, gnl|canFam2|chr30 (33791122-33791263) | |
| 698-860, gnl|danRer3|chr18 (23534144-23534269) | |
| 698-860, gnl|dasNov1|scaffold_79985 (5396-5257) | |
| 698-860, gnl|echTel1|scaffold_321717 (451-591) | |
| 698-860, gnl|fr1|chrUn (67917024-67916885) | |
| 698-860, gnl|galGal2|chr10 (19201408-19201545) | |
| 698-860, gnl|hg17|chr15 (64611611-64611751) | |
| 698-860, gnl|Hg17|chr15 (64611638-64611800) | |
| 698-860, gnl|loxAfr1|scaffold_3664 (14606-14746) | |
| 698-860, gnl|mm7|chr9 (64178773-64178633) | |
| 698-860, gnl|Mm7|chr9 (64178744-64178582) | |
| 698-860, gnl|monDom2|scaffold_12 (46364111-46363974) | |
| 698-860, gnl|oryCun1|scaffold_214099 (137706-137844) | |
| 698-860, gnl|panTro1|chr16 (65116865-65117005) | |
| 698-860, gnl|rn3|chr8 (68365545-68365409) | |
| 698-860, gnl|xenTro1|scaffold_862 (333870-334009) | |
| 884-1021, gnl|bosTau2|chr10 (6990887-6990750) | |
| 884-1021, gnl|Hg17|chr15 (64615324-64615461) | |
| 884-1021, gnl|Mm7|chr9 (64175838-64175701) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-518, gnl|bosTau2|chr10 (6999301-6998771) | |
| 1-518, gnl|Hg17|chr15 (64606803-64607312) | |
| 698-860, gnl|bosTau2|chr10 (6994502-6994340) | |
| 698-860, gnl|canFam2|chr30 (33791122-33791263) | |
| 698-860, gnl|danRer3|chr18 (23534144-23534269) | |
| 698-860, gnl|dasNov1|scaffold_79985 (5396-5257) | |
| 698-860, gnl|echTel1|scaffold_321717 (451-591) | |
| 698-860, gnl|fr1|chrUn (67917024-67916885) | |
| 698-860, gnl|galGal2|chr10 (19201408-19201545) | |
| 698-860, gnl|hg17|chr15 (64611611-64611751) | |
| 698-860, gnl|Hg17|chr15 (64611638-64611800) | |
| 698-860, gnl|loxAfr1|scaffold_3664 (14606-14746) | |
| 698-860, gnl|mm7|chr9 (64178773-64178633) | |
| 698-860, gnl|Mm7|chr9 (64178744-64178582) | |
| 698-860, gnl|monDom2|scaffold_12 (46364111-46363974) | |
| 698-860, gnl|oryCun1|scaffold_214099 (137706-137844) | |
| 698-860, gnl|panTro1|chr16 (65116865-65117005) | |
| 698-860, gnl|rn3|chr8 (68365545-68365409) | |
| 698-860, gnl|xenTro1|scaffold_862 (333870-334009) | |
| 884-1021, gnl|bosTau2|chr10 (6990887-6990750) | |
| 884-1021, gnl|Hg17|chr15 (64615324-64615461) | |
| 884-1021, gnl|Mm7|chr9 (64175838-64175701) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.145603) |