Non-Coding RNA Search

Ss1.1-rlin09_o4.5

Sequence:


               
               ATTCCTTTCATGACCTTGAAGCAAGTAACGCAACGTTTTTTGGTGCCTCAACAGTGCACT
TTTTAAAAACATGTTAATACTTTGGTGAGGAATATTGTTTAAAATTTTTTATACTTGCTG
TGATTGATAACTGTAGAACCAAAATGATAACTGAATTAAACAATCCCAAGATATTTTAGA
AATTTATGTACATATTTTGTCCATAAGATGTTAAATGATTCCTTCAGGTATGATGTCAAG
TTGCCAAGCACAATGAAAAAGATGTACTGCTTGTTCAAATAGAATGAAAAAGATCTGAGG
AAAAGTAAAATTTCTCGTTTTTCTCCTTATATTTTTAATGGGAATCGGTAGACACACTGT
CTAGGGTATGCTGTGCATTGTCGGCCCTATAATATGGCCTTTAATAGTGTAAGGTTCGAG
TTCACTTGCTCTGCATTTCCTGTGTTAGAAGCTGATTCCAGGCTGATGAAAACAGAGGAA
GCTCTGCTTTTGCTCAACATCATGACTTATCCAGTTTGACTTTGCCACTTGTCAGATAGT
TTATTGTTTCAATGAAAATATACTTGAATGATGAATTTATGTGAACATAAGACTTCTTGA
AAAATTAATGGCTTTCAACTTGTTGTCTCTTTGCAATCTGAATTTTAAAAGTATTTAAAC
AGAGTAGTACCAGAAATCAAATGCAGTATTCCCTCTCCCTTTTTAAGAGATTAAATTACT
TGGATTTTTGTATAGACTTTTGTATAACAATATGTATGGATGATTTGTGTAATGTATATA
AAGTTAAGCAACATGAAAATAAAAGTAAAACTGAATTGCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCCTTTCATGACCTTGAAGCAAGTAACGCAACGTTTTTTGGTGCCTCAACAGTGCACT
TTTTAAAAACATGTTAATACTTTGGTGAGGAATATTGTTTAAAATTTTTTATACTTGCTG
TGATTGATAACTGTAGAACCAAAATGATAACTGAATTAAACAATCCCAAGATATTTTAGA
AATTTATGTACATATTTTGTCCATAAGATGTTAAATGATTCCTTCAGGTATGATGTCAAG
TTGCCAAGCACAATGAAAAAGATGTACTGCTTGTTCAAATAGAATGAAAAAGATCTGAGG
AAAAGTAAAATTTCTCGTTTTTCTCCTTATATTTTTAATGGGAATCGGTAGACACACTGT
CTAGGGTATGCTGTGCATTGTCGGCCCTATAATATGGCCTTTAATAGTGTAAGGTTCGAG
TTCACTTGCTCTGCATTTCCTGTGTTAGAAGCTGATTCCAGGCTGATGAAAACAGAGGAA
GCTCTGCTTTTGCTCAACATCATGACTTATCCAGTTTGACTTTGCCACTTGTCAGATAGT
TTATTGTTTCAATGAAAATATACTTGAATGATGAATTTATGTGAACATAAGACTTCTTGA
AAAATTAATGGCTTTCAACTTGTTGTCTCTTTGCAATCTGAATTTTAAAAGTATTTAAAC
AGAGTAGTACCAGAAATCAAATGCAGTATTCCCTCTCCCTTTTTAAGAGATTAAATTACT
TGGATTTTTGTATAGACTTTTGTATAACAATATGTATGGATGATTTGTGTAATGTATATA
AAGTTAAGCAACATGAAAATAAAAGTAAAACTGAATTGCAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-820, gnl|bosTau2|chr14 (11915243-11916081)
               

               
               1-820, gnl|Hg17|chr8 (56814818-56813860)
               

               
               1-820, gnl|Mm7|chr4 (3477219-3476429)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-820, gnl|bosTau2|chr14 (11915243-11916081)
               

               
               1-820, gnl|Hg17|chr8 (56814818-56813860)
               

               
               1-820, gnl|Mm7|chr4 (3477219-3476429)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               lin (0.436808)
               

               
               sag (0.36543)
               

               
               bfe (0.299715)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               mgm (0.180343)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               sag (0.36543)
               

               
               bfe (0.299715)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               mgm (0.180343)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

	1-820, gnl\|bosTau2\|chr14 (11915243-11916081)
	1-820, gnl\|Hg17\|chr8 (56814818-56813860)
	1-820, gnl\|Mm7\|chr4 (3477219-3476429)

	lin (0.436808)
	sag (0.36543)
	bfe (0.299715)
	ret (0.257467)
	mgp (0.230681)
	spc (0.226732)
	mgm (0.180343)
	fco (0.157208)
	isp (0.150376)
	liv (0.146284)
	spl (0.143184)
	lyg (0.133103)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	pgl (0.118483)